Mycobacterium avium subsp. paratuberculosis E93: RE97_03650
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Entry
RE97_03650 CDS
T03847
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mavu
Mycobacterium avium subsp. paratuberculosis E93
Pathway
mavu03030
DNA replication
mavu03410
Base excision repair
mavu03420
Nucleotide excision repair
mavu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mavu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RE97_03650
03410 Base excision repair
RE97_03650
03420 Nucleotide excision repair
RE97_03650
03430 Mismatch repair
RE97_03650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mavu03032
]
RE97_03650
03400 DNA repair and recombination proteins [BR:
mavu03400
]
RE97_03650
Enzymes [BR:
mavu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RE97_03650
DNA replication proteins [BR:
mavu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RE97_03650
DNA repair and recombination proteins [BR:
mavu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RE97_03650
NER (nucleotide excision repair)
GGR (global genome repair) factors
RE97_03650
MMR (mismatch excision repair)
DNA ligase
RE97_03650
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RE97_03650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Auto_anti-p27
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AJK78373
LinkDB
All DBs
Position
804941..807022
Genome browser
AA seq
693 aa
AA seq
DB search
MSSAEADSVPPEVRRQWQELAETVREHQFRYYIKDAPIISDAEFDALFNELLALEERHPE
LRVADSPTQLVGGAGFATDFAEAAHLERMLSLDDVFDTDELIAWSNRVENEIGKDPHYLC
ELKIDGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSPSDDFPVPALLE
VRGEVFFLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGR
TEGFSPKTQHEAYTALSVWGLPVAEQTARVRGLAAVQERIGYWGEHRYDLQHEIDGVVVK
VDDVALQRRLGATSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAG
STVGLATLHNAAEVKRKGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGTEREFVMPTTCPE
CGTPLAPAKEGDADIRCPNARSCPAQLRERVFHVAGRGALDIEGLGYEAATALLKAGVIA
DEGDLFALTEDDLLRTELFRTKAGTLSANGTRLLQNLQKAKKVALWRVLVALSIRHVGPT
AARALATEFGDLDSIMSASTERLAAVEGVGPTIAAALTEWFTVDWHRAIVDKWRAAGVRM
ADERDASVPRTLEGLTVVVTGSLAGFSRDDAKEAILARGGKAAGSVSKKTDYVVAGDSPG
SKYDKAVELGVPILDEDGFRKLLAEGPPETPAD
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcggcagaggctgattcggtaccgcccgaggtgcggcggcagtggcaggagctg
gccgaaacggtccgcgaacaccagttccgctactacatcaaggacgcgccgatcatctcg
gacgccgagttcgacgcgctgttcaacgagctgctcgccctggaggagcgccaccccgag
ctgcgggtggccgattcgcccacgcagctggtcggcggggcgggtttcgccaccgacttc
gccgaggcggcgcacctggagcggatgctgagcctcgacgacgtcttcgacaccgacgag
ctaatcgcctggagcaatcgcgtcgagaacgagatcggcaaggacccgcactacctgtgc
gagctcaagatcgacggggtggccctgtcgctggtctaccgcgacggccggctggaacgc
gccgccacccggggcgacggccgggtcggcgaggacgtgacgctcaacgcacgcaccatc
gacgacgtgcccgaacgcctctcgcccagcgacgacttcccggttccggcgctgctcgag
gtgcgcggcgaggtgttcttcctgctcgccgacttcgaggcgctcaacgccagcctggtc
gaagacggcaaggcgccgttcgccaatccgcgcaacagcgcggccgggtcgctgcgccag
aagaacccggccgtcaccgcgcggcgcaagctgcggatgatctgccacggcatcggccgc
accgaggggttctcgccgaaaacccagcacgaggcctacaccgcgctgagcgtgtggggg
ctgccggtggccgaacagaccgcgcgggtgcgcgggctggccgcggtgcaggagcggatc
ggctactggggcgagcaccgctacgacctgcaacacgagatcgacggtgtggtggtcaaa
gtcgacgacgtcgcgttgcagcgccggctcggcgccacctcgcgcgcgccgcggtgggcg
gtcgcctacaagtacccgccccaggaggcgcagaccaagctcctcgacatccgcgtcaac
gtcgggcgcaccgggcgcgtcaccccgtttgcgttcatgaccccggtcaaggtggccggg
tcgacggtggggctggccaccctgcacaacgccgccgaggtcaagcgcaagggcgtgctg
atcggcgacaccgtgatgatccgcaaggccggcgacgtgatccccgaggtgctgggcccg
gtcgtcgacctgcgcgacggcaccgaacgcgaattcgtcatgcccacaacgtgtcccgag
tgcggcaccccgctggcgccggccaaggagggcgacgccgacatccgctgccccaacgcc
cggtcctgcccggcgcagctgcgagagcgggtgtttcacgtcgccggccgcggcgcactc
gacatcgaggggctgggctacgaggcggccaccgcgctgctcaaggccggggtgatcgcc
gacgagggcgacttgttcgcgctcaccgaggacgacctgctgcgcaccgagctgttccgg
accaaggccggcacgttgtccgcgaacggcacacggctgctgcagaacctgcagaaggcg
aaaaaggttgcgctgtggcgtgttttggtggcgctgtcgatccggcacgtggggccgacg
gcggcgcgcgccctggcgaccgagttcggcgatctggactcgatcatgtcggcgtccacc
gagcggctcgccgcggtggagggggtcggcccgacgatcgcggcggcgctcaccgaatgg
ttcaccgtcgactggcaccgcgcgatcgtggacaagtggcgggccgccggcgtgcggatg
gccgacgagcgcgacgccagcgtgccgcgcacgctggaggggctgacggtggtggtcacc
gggtcgctggccggtttctcccgcgacgacgccaaggaggcgatcctggcgcgcggcggc
aaggccgccggttcggtgtcgaagaagaccgactacgtggtggccggcgattcgccgggc
tccaagtacgacaaggcggtcgagctcggcgtgcccatcctggacgaggacggcttccgc
aagctgctggccgagggcccgcccgaaaccccggcggactga
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