Methanomethylophilus alvi: MMALV_07160
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Entry
MMALV_07160 CDS
T02624
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
max
Methanomethylophilus alvi
Pathway
max03030
DNA replication
max03410
Base excision repair
max03420
Nucleotide excision repair
max03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
max00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MMALV_07160
03410 Base excision repair
MMALV_07160
03420 Nucleotide excision repair
MMALV_07160
03430 Mismatch repair
MMALV_07160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
max03032
]
MMALV_07160
03400 DNA repair and recombination proteins [BR:
max03400
]
MMALV_07160
Enzymes [BR:
max01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MMALV_07160
DNA replication proteins [BR:
max03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MMALV_07160
DNA repair and recombination proteins [BR:
max03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MMALV_07160
NER (nucleotide excision repair)
GGR (global genome repair) factors
MMALV_07160
MMR (mismatch excision repair)
DNA ligase
MMALV_07160
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MMALV_07160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Lar_restr_allev
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AGI85455
UniProt:
M9SDH7
LinkDB
All DBs
Position
689811..691787
Genome browser
AA seq
658 aa
AA seq
DB search
MGDDREGKTALMRELIDRLNAASDAYYNGRAEIMTDYEWDAMFDRLKGLEEETGEVLPDS
PTAKVSEDDITGQKEPHEFPALSLAKTKKVEDLVKWADGHPIWISWKLDGLTLVVTYDGG
RLTKIVTRGDGHIGTNITHLADGLYDIPRTIPAKGHLVIRGEAVISYSDFEQFCMESEGD
FANPRNLASGSLSLKDVEEVKRRRIHWVPFSLVYSDDDIPTWGEKMDLLEKAGLHPVERE
FLKDPDIGTVGNAIDRWTEKVTGRKNPYPVDGLVITYDDSALASTGSVTGHHATRAGLAF
KWQDESADTVLDHIEWSCAASSITPVAVFDPVELEGTTVKRASLCNVSECGRLRIGGPGT
EISVIKANKIIPKVIRVRRTVGELSVPDRCPVCGSPAEVRGSDTGVLKLYCTNGDCAAKQ
LRKFTRFVSKEGLDIDGISEQTISKFVNMGWIRSYADFFRLSDHREEMSQMDGFGEKSVQ
NIMDSIERSRVTDGQSILFALNIPMCGLEVAKRLMAVYSLDDLIRAVSSGDDSVLSDIDG
IGPEKSASFAGWFRDQRNMDSFRDLMTQVKVKVPERKEIGSRCEGLTFVITGDVHHYANR
NELKAYIESQGGKVTGSVTGSTDFLINNDPESTSSKNKKAKELGKPIISEDEFLTRFG
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgacagggaagggaagacggctctcatgagggagctgatagacaggctcaac
gcggcctccgacgcctattacaacggcagggcggagatcatgacggattacgagtgggac
gccatgttcgaccgtctgaaagggctggaggaggagacgggggaggtcctcccggacagc
cctaccgccaaggtgtccgaggacgacataacgggacagaaggagccgcacgagttcccc
gcactgtccctggccaagacgaagaaggtcgaggacctggtgaaatgggcggacggccat
ccgatctggatctcatggaagttggacggcctcacccttgtcgtgacgtacgacggaggg
aggctgacaaagatagtcaccagaggggacgggcacataggtacgaacataacccatctg
gcggacggtctttacgacatcccccggacgatcccggcgaagggccatctggtcatccgc
ggggaggcggtcatatcgtattccgatttcgagcagttctgcatggaatcggagggggat
ttcgccaacccgaggaacctggcatccggttccctgtccctgaaggatgtggaggaggtg
aagaggaggaggatccactgggtcccgttcagtctcgtgtactcggatgacgacatcccg
acatggggcgagaagatggatctcctggagaaggccggcctccaccctgtggagagggag
ttcctgaaggacccggatatcgggacggtcgggaacgccatagacagatggacggagaag
gtcaccgggcgcaagaatccgtatcctgtcgacggcctcgtgataacgtatgacgattcc
gccctcgcatcgaccgggtcggtgaccggacaccatgccacccgtgccggtctcgctttc
aaatggcaggacgagtcggccgacacggtcctcgaccacatagagtggagctgtgcggcc
tcgtccataaccccggtcgcggtattcgatcccgtggagctggaagggacgaccgtcaag
agggcgtccctctgcaacgtaagcgagtgcggccgtctgcgtatagggggtccggggacg
gagatatccgtcatcaaggccaataagatcatcccgaaggtgatcagggtcaggaggacg
gtcggcgagctgtccgttccggacaggtgcccggtctgcgggtccccggcggaggtgagg
ggatcggataccggtgtcctcaagctctattgcaccaacggggactgtgccgcgaaacaa
ctcaggaagttcacgcgtttcgtatccaaagaggggctggacatcgacgggatatccgag
cagacgatatccaagttcgtcaacatggggtggatcaggagctatgccgacttcttccgc
ctgtcggatcatagggaggagatgtcccagatggacggattcggggagaagtccgtgcag
aacatcatggattccatagagcggtcgcgtgtgaccgacggtcagagcatcctcttcgcc
ctcaacataccgatgtgcggtctcgaggtggccaaaaggctgatggccgtctattcgctg
gatgacctgatacgtgccgtgtcgtctggagacgacagcgtcctatcggacatagacggg
atagggcccgagaagtcggcctcgttcgcaggatggttccgcgatcaacgcaatatggat
tcgttcagggatctgatgacgcaggtcaaggtgaaggttcccgagaggaaggagatcggc
agcagatgcgaaggactgaccttcgtcataacgggggatgtgcatcattatgccaaccgt
aacgagctgaaggcgtacatagagtcccagggcggaaaggtcaccggttccgtgacggga
tctacggatttcctgatcaacaatgatccggagtccacctcatccaagaacaagaaggcc
aaggaattggggaagcccataatatcggaagacgagttcctgacacgtttcggatga
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