Microbacterium azadirachtae: NFX31_09715
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Entry
NFX31_09715 CDS
T08922
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
maza
Microbacterium azadirachtae
Pathway
maza03030
DNA replication
maza03410
Base excision repair
maza03420
Nucleotide excision repair
maza03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
maza00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NFX31_09715 (ligA)
03410 Base excision repair
NFX31_09715 (ligA)
03420 Nucleotide excision repair
NFX31_09715 (ligA)
03430 Mismatch repair
NFX31_09715 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
maza03032
]
NFX31_09715 (ligA)
03400 DNA repair and recombination proteins [BR:
maza03400
]
NFX31_09715 (ligA)
Enzymes [BR:
maza01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NFX31_09715 (ligA)
DNA replication proteins [BR:
maza03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NFX31_09715 (ligA)
DNA repair and recombination proteins [BR:
maza03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NFX31_09715 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NFX31_09715 (ligA)
MMR (mismatch excision repair)
DNA ligase
NFX31_09715 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NFX31_09715 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
UXW84522
LinkDB
All DBs
Position
complement(2030792..2033107)
Genome browser
AA seq
771 aa
AA seq
DB search
MPENISLEAARAEAEELTTRILEAKDAYYGRDTSLVDDATYDGWMHRLEELERLHPELQG
QDSPTQMVGAAEATGLQTIEHAERMLSLDNVFSIEELREWAAKTRAAAGREVAWLTELKI
DGLAINLRYENGVLTSAATRGDGRVGEIVTENALRVAGIPERLSGSGHPPIVEVRGEVFI
PVAAFERLNAAQAAFRDRAYAEALERWQARGGAKKPFDEEKARTAAARRFPSFANPRNAA
SGGLRQQLDKKDGMELEAGLLRVDSLALYVHGIGAWQDPPVAAQSQVYDLLAEWGLPTSP
HTRVCSSIDEVAEFVAYFGEHRHDIEHELDGIVVKVDELELHDELGATSRAPRWAIAYKY
PPEEVQTTLLDIVVSVGRTGRATPFAVMAPAHVAGSVVRQATLHNKDVVKAKGVLIGDTV
VLRKAGDVIPEVLGPVVERRDGTEREFVMPERCPECGSILAPAKEGDIDLRCPNTRSCPA
QVRGRVEHIGSRGALDVEALGEVTAAALTQPSHPAVPPLETEAGLFTLSLDQLVPIEVVV
RDAETGLPKEDEDGIVKTRAPFRRNATAAEKKDGITAPQPSSQAVKLLAELEKAKTKELW
RLLVALNIRHVGPVAARALAQWFGSLDAIRAASREELAAVEGVGGIIADSLLDWFTVDWH
QEIVRRWADAGVQWATPGHPGPGAAVSEGGVLDGLTVVATGSLDGYTREGAQEAIIKAGG
KAASSVSKKTDFVAAGPGAGSKLAKAEELGVRVLDAAQFHLLVTEGPAALG
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
gtgccggagaacatctcgttggaagccgcccgcgccgaggcggaggagctgaccacccgc
atcctcgaggcgaaggacgcgtactacgggcgcgacacgtctctcgtggacgacgcgacg
tacgacggctggatgcaccggctcgaagagctcgagcgactgcaccccgagctccagggg
caggactcgccgacccagatggtgggcgcggccgaggcgacgggcctgcagaccatcgag
cacgccgagcgcatgctcagcctcgacaacgtgttctcgatcgaggagctgcgggagtgg
gccgccaagacccgcgccgccgcgggccgcgaggtggcctggctcaccgagctcaagatc
gacgggctcgcgatcaacctccgttacgagaacggcgtgctcacgtccgcggcgacccgc
ggcgacgggcgcgtcggcgagatcgtcaccgagaacgcgctgcgcgtcgccggcatcccc
gagcgcctgagcggatccggccacccgccgatcgtcgaggtgcgcggagaggtgttcatc
ccggtcgccgccttcgagcgcctgaacgccgcgcaggccgccttccgggaccgcgcgtac
gccgaggccctggagcgctggcaggcgcggggcggggccaagaagccgttcgacgaggag
aaggcccgcacggccgcggcgcgccgcttcccgtcgttcgcgaacccgcgcaacgcggcg
agcggaggcctgcgtcagcagctcgacaagaaggacggcatggagctcgaggcgggactg
ctccgcgtcgactcgctcgcgctgtacgtgcacggcatcggcgcctggcaggatccgccg
gtcgcggcgcagagccaggtgtacgacctgctggccgagtggggtctgcccacgagcccg
cacacgcgggtgtgctcctcgatcgacgaggtcgccgagttcgtcgcgtacttcggcgag
catcgccacgacatcgagcacgagctcgacggcatcgtggtcaaggtcgacgagctcgag
cttcacgacgagctcggtgccaccagccgcgcgccgcgctgggcgatcgcctacaagtac
ccgccggaggaggtgcagaccaccctcctcgacatcgtcgtctcggtcggccggacgggg
cgcgccaccccgttcgccgtgatggcgcccgcgcacgtcgccggatccgtggtgcggcag
gccacgctgcacaacaaggacgtggtcaaggcgaagggcgtgctcatcggcgacaccgtc
gtgctgcgcaaggccggcgacgtgatcccggaggtgctcggccccgtggtcgaacgccgt
gacggcaccgagcgcgagttcgtgatgcccgagcgctgcccggagtgcgggtcgatcctc
gcgcccgccaaggagggcgacatcgatctgcgctgccccaacacgcgctcgtgccccgcg
caggtgcgcggtcgggtcgagcacatcggctcgcgcggcgccctggacgtggaagcgctc
ggcgaggtgacggccgcggctctgacgcagcccagccaccccgcggtgccgcccctggag
accgaggccgggctgttcacgctctccctcgatcagctcgtgcccatcgaggtcgtcgtt
cgcgacgccgagaccgggctgccgaaggaggacgaggacgggatcgtgaagacccgggcc
ccgttccggcgcaacgccacggcagcggagaagaaggacgggatcacggcgccgcagccg
tcctcgcaggcggtcaagctgctggcggagctggagaaggcgaagaccaaggagctgtgg
cggctgctcgtcgccctgaacatccggcacgtcggaccggtcgcggcgcgcgcgctcgcg
cagtggttcggctcgctcgacgcgatccgcgccgcgtcgcgtgaggagctcgccgcggtc
gagggggtcggcgggatcatcgccgactcgctgctggactggttcacggtcgactggcac
caggagatcgtgcggcgctgggcggacgccggggtgcagtgggcgacgcccggccatccc
ggcccgggggccgccgtgtcggagggcggtgtgctggacgggctcaccgtcgtggcgacg
ggctccctcgacgggtacacgcgcgagggcgcgcaggaggcgatcatcaaggccggcggc
aaggcggcctcgagcgtctccaagaagaccgacttcgtcgccgccggcccgggggcgggg
tccaagctcgccaaggccgaggagctcggggtgcgggtcctcgacgccgcgcagttccac
ctgctcgtgacggaggggcctgcggcgctcggctga
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