Candidatus Methylopumilus turicensis: BN1209_0889
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Entry
BN1209_0889 CDS
T03844
Symbol
ligA
Name
(GenBank) DNA ligase, NAD(+)-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mbac
Candidatus Methylopumilus turicensis
Pathway
mbac03030
DNA replication
mbac03410
Base excision repair
mbac03420
Nucleotide excision repair
mbac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mbac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN1209_0889 (ligA)
03410 Base excision repair
BN1209_0889 (ligA)
03420 Nucleotide excision repair
BN1209_0889 (ligA)
03430 Mismatch repair
BN1209_0889 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbac03032
]
BN1209_0889 (ligA)
03400 DNA repair and recombination proteins [BR:
mbac03400
]
BN1209_0889 (ligA)
Enzymes [BR:
mbac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BN1209_0889 (ligA)
DNA replication proteins [BR:
mbac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN1209_0889 (ligA)
DNA repair and recombination proteins [BR:
mbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BN1209_0889 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN1209_0889 (ligA)
MMR (mismatch excision repair)
DNA ligase
BN1209_0889 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN1209_0889 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH_3
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
CEN55932
UniProt:
A0A0B7IZT6
LinkDB
All DBs
Position
1:complement(866765..868855)
Genome browser
AA seq
696 aa
AA seq
DB search
MTTDQQASIQGGLFGEEPLTAKPADEARISQIRDFIRLYDFQYYVQDAPTVSDNEYDGLF
RELQALEAKHPNLVTPDSPTQRVGGSPVKAFSSITHRVAMLSLNNAFGDDELNAFDKRVR
EGLGINQVEYAVEPKFDGLAITLTYENGYFTQGATRGDGYTGEDVTHNLKTIRSIPQRLN
IQNPPKLLEVRGEVLMFKSDFEFLNQQQITRGDKVFANPRNAAAGSLRQLDPNITATRPL
SFFAYGLGASEGVPHLLTHSACMDYLESLRLPVCDLRAVVSGAGGLSGFFEKVGALRSAL
AYDIDGVVYKVNSLAYQNELGFVSRAPRWAIAHKFPAEEALTVVEGIDVQVGRTGAITPV
ARLKPVFVGGVTVTNATLHNEDEMRRKDVRIGDTVSIRRAGDVIPEVVSVMLNMRPSNAL
IFTMPSNCPVCGSHISRQEDEAVARCTGGISCKAQRKQAMIHFASRKAMDIEGFGDKLVD
QLVDGDLANNLADIYRLDFNTLASLDRMAEKSAQNILDALIKSKKTTLARFIYALGIRNV
GEATAKDLARYFGSVEAIQNADVDQLQQVPDVGPIVAESIVNFFAEQHNREVIASLVKPA
EEGGSGIHWDAVIAQSGASGVLSGKTLVLTGSLPTLGREDAKALIEKAGGKVSGSVSKKT
DFVVAGADAGSKLAKAQELNVNVIDETDLLRLLSEQ
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgacaacagatcagcaagcgtctattcagggtggactttttggcgaggagccattaact
gccaagcctgcggatgaggctagaatttctcagatacgcgatttcattcgcttgtatgat
tttcagtactacgtacaagatgcgcccaccgttagtgataatgaatatgacggtctattc
cgagagcttcaagcgttagaagctaaacatccaaatttagtcacacctgattcaccaacg
cagcgagttggcggttcgccagtaaaggctttcagcagcattacgcatcgtgttgccatg
ctttctcttaataatgcatttggtgatgatgagctaaatgcctttgataagcgtgttcga
gaaggtttaggcataaaccaagttgaatatgccgtcgagcccaagtttgatggtcttgca
attacgcttacttacgaaaatggctattttacccaaggggccactcgtggtgatggttac
accggcgaggatgtgactcataatctcaagacgattcggagtattccgcagcgactaaac
attcaaaacccacctaagcttcttgaagtgcgtggagaggtgttaatgtttaaatcagat
tttgaattcctcaatcaacaacaaataacacgtggcgacaaagtttttgccaatcctcgt
aacgcagccgctggcagcctccgtcagcttgatccaaacattacagcaacgcgtccactt
tcattttttgcatatggtctaggcgcaagtgagggggtgcctcatttgttaacgcatagc
gcttgcatggattatttagagagccttcgtctgcctgtgtgtgatttgagggctgtggtg
agcggggctggtggactttcggggttttttgaaaaagttggcgcccttagatcagcatta
gcttatgacatcgatggtgtcgtttataaagttaactcattggcatatcagaatgagtta
ggatttgtttcgagggcgccacgttgggcgattgctcacaagtttcctgcagaagaggcg
ctaacagttgttgaaggcattgatgttcaagtgggtcgcacaggtgcaattaccccagtt
gccaggctaaagccagtgtttgtaggtggagtgacagtgactaatgcgacgcttcacaac
gaagatgaaatgcgccgtaaagatgttcgcatcggtgatactgtcagtatcagaagagca
ggggatgtgattcctgaggtggtcagtgtgatgctgaatatgcgtccatccaatgcatta
atatttaccatgccctcgaactgcccagtttgcggctctcatatcagtcgtcaagaagat
gaggctgtcgcgcgttgcactgggggcatatcttgcaaggcgcaaagaaaacaagccatg
attcattttgcttcacgcaaggccatggatattgagggctttggagataaattagtggat
cagcttgttgatggggatttggccaataatctagcggatatttatcgtctagattttaat
acactcgctagtcttgatcgcatggcagaaaagtctgcacaaaacattttagatgcgcta
attaagagtaaaaaaacaacgctcgcccgtttcatttatgccttagggattcgaaatgtt
ggcgaggcgacggccaaggatttggctcgttattttggtagcgttgaggctatccaaaat
gccgatgttgatcagttgcaacaagtgccagatgtaggacctattgtggcagaatcaatc
gttaatttctttgctgaacagcacaacagggaggtgattgctagccttgtcaagccagca
gaggagggtggttcgggtattcattgggatgctgtgatcgcacaatcaggggcttcaggt
gtattgtcaggaaaaacacttgtgttaacaggatcgcttccaacacttggtcgagaggat
gctaaagcgttgattgaaaaagcaggaggtaaggtgagtggtagcgtatcgaaaaaaact
gattttgttgtcgctggggccgatgctggaagtaagctagccaaagcacaggagctaaat
gttaatgtgattgatgaaactgatttattacgcctgttgtccgaacaatag
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