Mycobacterium basiliense: MB901379_01506
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Entry
MB901379_01506 CDS
T07125
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mbai
Mycobacterium basiliense
Pathway
mbai03030
DNA replication
mbai03410
Base excision repair
mbai03420
Nucleotide excision repair
mbai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mbai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MB901379_01506 (ligA)
03410 Base excision repair
MB901379_01506 (ligA)
03420 Nucleotide excision repair
MB901379_01506 (ligA)
03430 Mismatch repair
MB901379_01506 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbai03032
]
MB901379_01506 (ligA)
03400 DNA repair and recombination proteins [BR:
mbai03400
]
MB901379_01506 (ligA)
Enzymes [BR:
mbai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MB901379_01506 (ligA)
DNA replication proteins [BR:
mbai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MB901379_01506 (ligA)
DNA repair and recombination proteins [BR:
mbai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MB901379_01506 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MB901379_01506 (ligA)
MMR (mismatch excision repair)
DNA ligase
MB901379_01506 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MB901379_01506 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
Auto_anti-p27
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
VDM87954
UniProt:
A0A3S4BD64
LinkDB
All DBs
Position
I:1690202..1692250
Genome browser
AA seq
682 aa
AA seq
DB search
MLRQWQELAEKVREHQFRYYVRNAPTVTDAEFDKLLRNLEALEAQYPELRSPDSPTQLVG
GAGFATDFQPVDHLERMLSLDNAFSADELGAWANRIHAEVGDAARYLCELKIDGVALSLV
YREGRLSRASTRGDGRTGEDVTLNARTIEDVPERLHLSDEYPMPAVLEVRGEVFFRVADF
QALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHSEGFRPVSLHEA
YLALRTWGLPVSVHTRLVDDMSAVQERIDFWGEHRHEVDHEIDGVVIKIDDVALQRRLGS
TSRAPRWAIAYKYPPEEAQTKLLDIKVNVGRTGRITPFAFMTPVKVAGSTVSQATLHNAA
EVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDRSEHEFVMPTTCPECGTPLAPEKEGD
ADIRCPNAQRCPAQLRERVFHVASRSALDIEVLGYEAAVALLQAGVIASEGDLFTLTEDD
LLRTDLFRTKAGDLSANGKRLLANLDKAKTAPLWRVLVALSIRHVGPTAARALATEFGRL
DAIAEASTEQLAAVEGVGPTIASAVSEWFTVDWHREIVDNWRAAGVRMADDRDESVPRNL
AGLTVVVTGSLTGFSRDEAKEAIVARGGKAAGSVSKKTSYVVAGDSPGSKYDKAVELGVP
ILDEDGFAKLLTEGPPDTEQPA
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
gtgttgcggcagtggcaggaactggccgagaaggtacgtgaacaccaattccgctactac
gtgcgaaacgcgcccaccgtcaccgacgcggaattcgacaagctgctgcgcaatctcgaa
gcgctcgaagcgcaatatcccgagctgcgcagcccggactcgcccacgcagttggtcggc
ggcgccggattcgcgacagacttccagccggttgaccatctggagagaatgctcagcctc
gacaacgcattcagcgccgatgaactcggcgcctgggccaaccgcatccatgccgaggtc
ggcgacgcggcacggtatttgtgtgagctcaagatcgatggcgtggcgttgtcgttggtc
taccgggagggccggctgagtcgtgcgtcgacgcggggagatggacgcaccggcgaggat
gtgaccctcaatgcccgcaccatcgaggacgtccccgaacggctacacctcagtgacgag
tacccgatgcccgccgtgctcgaagtccgcggtgaggtgttttttcgggtggccgatttt
caggcgctcaacgccagcctggtggaagagggcaaggcaccgtttgccaacccgcgaaac
agcgcggcggggtcgttgcgccagaaagacccggcggtcaccgcccgtcggcggctgcgg
atgatttgccatgggctgggtcatagcgagggttttcgcccggtcagcttgcacgaggcc
tacctggcgttgcgaacctggggcttgccggtgtccgtgcacaccaggttggtcgacgac
atgtcagccgtgcaggaacgcatcgacttttggggcgagcatcgccatgaggtggaccac
gaaatcgacggcgtggttatcaagatcgacgacgtcgccctacagcgcaggctcggctcc
acctcgcgggcaccgcgctgggccatcgcgtacaagtatccgcccgaggaagcgcagacc
aagctgctcgacatcaaggtgaacgttgggcgcaccggacggattaccccatttgcattc
atgaccccggtcaaggtggccgggtcgacggtgagccaggccaccctgcacaacgccgct
gaggtcaagcgcaaaggtgtgctgatcggagacaccgtggtgatccgcaaggccggcgac
gtaatccctgaggtgttgggccccgtggtcgacctgcgcgatcgctccgaacacgaattc
gtcatgcccacaacatgtcccgaatgcggcaccccgttggcgccggagaaggaaggcgac
gccgacattcgttgtcccaacgcccagcgctgtccggcccagttgcgagagcgagtgttt
cacgttgccagccgaagtgccctggacatcgaggtgctgggatatgaagcggcggtcgcg
ctgctgcaagccggagtgatcgccagcgagggcgacctgttcacgctcaccgaagacgac
ctcttgcgcaccgacctgttccgcaccaaggccggcgacctgtcggccaacggtaaacgg
ttgctggccaacctcgacaaggcaaagaccgcgccgctgtggcgcgtgctggtggcgttg
tccatccggcacgtcgggccgaccgcggcccgcgcgctggccaccgaattcggcaggctg
gacgctatcgccgaagcgtccaccgagcagctcgccgccgtggagggtgtgggacccacc
attgcctcggcggtttcggagtggttcaccgtcgactggcaccgcgagatcgtggacaac
tggcgggcggctggggtgcggatggccgacgaccgtgacgagagcgtgccgcgcaacctc
gccgggttgaccgtggtggtcaccggctcgttgaccgggttttcccgggacgaggccaag
gaggccattgtcgcgcgtggcggcaaggccgctggttcggtctcgaagaagacgtcctac
gtcgtcgcgggcgactcgccgggatcgaagtacgacaaggccgttgagctgggggtacca
atcctcgatgaggacgggtttgcaaagctgctgaccgaaggaccccctgacaccgagcag
ccagcgtga
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integrated database retrieval system
