Candidatus Methylopumilus planktonicus: BN1208_0800
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Entry
BN1208_0800 CDS
T03869
Symbol
ligA
Name
(GenBank) DNA ligase, NAD(+)-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mbat
Candidatus Methylopumilus planktonicus
Pathway
mbat03030
DNA replication
mbat03410
Base excision repair
mbat03420
Nucleotide excision repair
mbat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mbat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN1208_0800 (ligA)
03410 Base excision repair
BN1208_0800 (ligA)
03420 Nucleotide excision repair
BN1208_0800 (ligA)
03430 Mismatch repair
BN1208_0800 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbat03032
]
BN1208_0800 (ligA)
03400 DNA repair and recombination proteins [BR:
mbat03400
]
BN1208_0800 (ligA)
Enzymes [BR:
mbat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BN1208_0800 (ligA)
DNA replication proteins [BR:
mbat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN1208_0800 (ligA)
DNA repair and recombination proteins [BR:
mbat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BN1208_0800 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN1208_0800 (ligA)
MMR (mismatch excision repair)
DNA ligase
BN1208_0800 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN1208_0800 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
CEZ19686
UniProt:
A0A0D6EW08
LinkDB
All DBs
Position
1:complement(731470..733485)
Genome browser
AA seq
671 aa
AA seq
DB search
MKPDKENIKKKIQELIEKISVFDYQYYVLDNPSISDFEYDTIFRSLVDLENVNPELIRPD
SPSQRVGGKALAAFESVIHRQAMLSLNNAFEEAELMAFDKRIKDDIGIDEVEYAVEPKFD
GLAITLTYEDGIFVQGATRGDGYTGENVTHNLRTIRSIPTKLNHINPPKILEVRGEVLML
KKDFELLNQKQESLGEKKFANPRNAAAGSLRQLDPRITVTRPLTFFSYGLGISEPNLNLK
THTETIQLLKKINLPISDLSTSVKGIKGLQSFYEKVLKLRDSLAYDIDGVVYKVNSFNYQ
NELGFVSRAPRWAIAHKFPAEEALTEILDISVQVGRTGAITPVARLKPVFVGGVTVTNAT
LHNEDEMIRKDVHIGDIVSVRRAGDVIPEIVRVLLDKRPKTITKFKMPAECPECSSPLVR
IDDEAIIRCSGGLICPAQQKQSIIHFASRKAMDIEGLGDKSVEQLVTVGLIHGLPDIFKL
ELQQLVSLDRMAEKSGQNLLDAIEKSKLTSLPRFIYALGIRNVGESTAKDLAGFYGDLNE
IMKQTEESLQLVPDIGPTVAKSINDFFMQTKNREVIKSLIELGVHWPKYDIKKSASGIFA
TKTFVLTGTLPSMSRDDAKSIIEMNGGKVAGSVSKKTDYVVAGSDAGSKLATAQELGVKI
ISQEELLKLII
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgaagcctgataaagaaaatattaagaaaaaaattcaagagctaatcgaaaagataagc
gtattcgattatcaatattatgttttagacaatccttctatttcagattttgaatatgac
acaatctttaggtcacttgttgatttagagaatgtaaatccagagctaattcgacctgat
tcaccttcccaaagggtagggggtaaggcactagctgcttttgagagtgttattcatcgt
caagcaatgttatctctaaataacgctttcgaagaggctgagcttatggcttttgataag
cgcattaaagatgatattggtatcgatgaagtagaatatgcagttgagccgaaatttgac
ggacttgcgatcacactcacttatgaagatggtatttttgttcagggtgcgacacggggt
gatggctacacaggggaaaatgtcacacataatttaagaactattcgctcaataccaact
aaactcaatcatataaatccacctaaaattttagaagtgagaggtgaggtcttgatgctt
aaaaaagactttgaattactaaatcaaaagcaggaatctttaggcgaaaaaaaatttgca
aatccaagaaatgcggctgcagggagtttaaggcagcttgatcccagaataacagtaaca
agaccacttacatttttttcctatggtttgggcataagcgaacccaatttaaatttaaaa
actcatacggaaacaattcaacttctaaaaaaaattaatttacctatttctgatttatct
acaagtgttaaaggtataaaaggcttgcaaagtttttatgagaaggtattaaagttaaga
gactcactagcctatgacatcgatggcgtagtatataaagttaattcctttaattatcag
aatgagttgggttttgtatcacgcgctcctcgatgggctatcgcccataaatttccggcc
gaagaagcattgactgaaattttagacatcagtgttcaggttggtcgaacaggggctata
acgcctgtagcgcgattgaaaccagtcttcgtaggtggtgtaactgtgacgaatgcaacc
cttcataatgaggatgagatgattcgcaaagatgttcatattggagatattgtaagcgtt
cgaagagcaggggatgtgattcctgaaattgtaagggtgttacttgataagagacccaag
acaattacgaaatttaaaatgccagcagaatgtccggaatgtagctcacctcttgtcaga
attgatgatgaagcaatcattcgttgttcaggcggcctaatttgtcctgcacaacaaaag
caatctattattcattttgcatctcgaaaggctatggatatcgaaggattgggagataaa
tctgttgaacaattagttaccgtaggcctgattcacgggttacctgatattttcaaatta
gaacttcaacaattagtcagtcttgatcgtatggcagaaaaatccggtcaaaacttatta
gatgctattgaaaaaagcaaattaacatcattacctcgatttatttatgcgcttggtatt
aggaatgtaggtgagtctaccgccaaagatcttgctggtttctatggtgatttaaatgaa
attatgaaacaaacggaagaaagcttacagcttgtgcctgatattggccctacagttgca
aaatcgataaatgatttttttatgcaaactaaaaacagggaagttattaaatccttaata
gagctaggcgttcattggcctaaatacgatattaaaaaatctgcttcaggaatatttgca
actaaaacttttgtgctcactggaactttgccttcgatgtcacgtgacgatgctaaatca
atcattgagatgaacgggggaaaggtagcaggaagtgtttctaaaaaaactgattatgtt
gttgcgggatcagatgctggaagtaagctagccacggctcaagaacttggtgttaaaatt
atttcacaagaagagcttttgaaacttataatttaa
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