Microbacterium binotii: LXM64_07745
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Entry
LXM64_07745 CDS
T08238
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mbin
Microbacterium binotii
Pathway
mbin03030
DNA replication
mbin03410
Base excision repair
mbin03420
Nucleotide excision repair
mbin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mbin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LXM64_07745 (ligA)
03410 Base excision repair
LXM64_07745 (ligA)
03420 Nucleotide excision repair
LXM64_07745 (ligA)
03430 Mismatch repair
LXM64_07745 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbin03032
]
LXM64_07745 (ligA)
03400 DNA repair and recombination proteins [BR:
mbin03400
]
LXM64_07745 (ligA)
Enzymes [BR:
mbin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LXM64_07745 (ligA)
DNA replication proteins [BR:
mbin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LXM64_07745 (ligA)
DNA repair and recombination proteins [BR:
mbin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LXM64_07745 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LXM64_07745 (ligA)
MMR (mismatch excision repair)
DNA ligase
LXM64_07745 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LXM64_07745 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
HHH
Nlig-Ia
PTCB-BRCT
AAA_5
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UIN32191
LinkDB
All DBs
Position
1537497..1539812
Genome browser
AA seq
771 aa
AA seq
DB search
MDDDTTLAEARAEAAELTERILRARDAYYGEDAELVDDATYDGWIRRLEELERLHPEVQT
QDSPTLSVGAASTTMFAPVEHAERMLSLDNVFSPDELRDWCVKTQASAGRPVRWLTELKI
DGLAISLRYENGVLTSAATRGDGRIGEDVTVNALRVHGIPERLGGTGHPALVEVRGEVFI
PVAAFEELNALQARMRERVIEQARERGNLTEERARLSADRRFPAFANPRNAASGGLRQQL
DKKDGLELEAGRARLASLRLFVHGIGAWTAPPVASQSEVYDLLAEWGLPTSPYYKTFDDI
DGVLDFVAHYGEHRHDVEHELDGIVVKVDELALHDELGATSRAPRWAIAYKYPPEQVNTR
LLDIVVSVGRTGRATPFAVMAPARVAGSVVRQATLHNQDVVKVKGVLIGDMVVLRKAGDV
IPEVLGPVVELRDGSERAFVMPRDCPVCGTPLAPAKEGDVDLRCPNARSCPAQVRGRVEH
IGSRGALDIEALGEVTAAALTQADGGARAPLDTEAGLFDLTLDELVPIEVVVRDAETGEP
KLDDATGEPVRRAPFRRNPTPAERKSGLLTPQPSAQALTLLDELEKAKTKELWRFLVALN
VRHVGPVAARALAQWFGSVSAIRSASREELAAVEGVGGIIADAVIAWFEIDWHREIVERW
EAAGAQLSTPGHPGPGAAVVEGGVLEGLTVVATGTLEGYTREGAQEAILAAGGKAGSSVS
KKTDFVAAGPGAGSKLAKAEQLGVRIIDAAQFRILVEQGPAALDALAPDAG
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atcgacgatgacacgaccctcgcggaggctcgtgcggaagcggcggagctgacggagcgc
atcctccgcgcccgtgacgcctactacggcgaagacgccgagctcgtcgacgacgccacc
tacgacggctggatccgccggctggaagagctggagcggctgcatccggaggtgcagacc
caggattcgcccacgctcagcgtcggcgcggcatccaccacgatgttcgcgcccgtcgag
cacgccgagcggatgctcagcctcgacaacgtgttcagcccggacgagctgcgggactgg
tgcgtcaagacccaggcctccgcggggcgtccggtgcggtggctgaccgagctgaagatc
gacgggctcgcgatcagtctccgctacgagaacggtgtgctcacctccgctgccacgcgc
ggcgacgggcgcatcggtgaggacgtcaccgtcaacgcgctgcgcgttcacggcatcccc
gaacgcctgggcggcacgggccaccccgctctcgtcgaggtgcgcggtgaggtcttcatc
ccggtcgcggccttcgaggagctcaacgccctccaggcccggatgcgggaacgcgtcatc
gagcaggcgcgtgagcgcggcaacctcaccgaggagcgtgcgcggctcagcgccgaccgt
cgattcccggcgttcgcgaatccgcgcaacgccgccagcggcggactgcgtcagcaactc
gacaagaaggacggtctcgagctcgaggccgggcgggctcgtctcgcgtctctgcggctg
ttcgtgcacggcatcggcgcctggacggcgccgcccgtggcctcccagagcgaggtctac
gacctcctcgcggagtgggggctgccgacgagcccctactacaagaccttcgacgacatc
gacggcgtcctcgatttcgtggcgcactacggcgagcatcgtcacgatgtggagcatgaa
ctcgacggaatcgtcgtcaaggtggacgagctcgcgctgcacgacgagctgggcgcgacg
agccgggcgccgcgttgggcgatcgcctacaagtaccctcccgagcaggtgaacacccgc
cttctcgacatcgtcgtctcggtcgggcgtacgggccgtgcgaccccgttcgcggtcatg
gcaccggcgcgcgtcgcgggctcggtcgtgcggcaggcgacgctgcacaaccaggacgtc
gtcaaggtcaagggcgtgctcatcggagacatggtcgtgctccgcaaagcgggcgatgtg
atccccgaggtcctcggtcccgtggtggagctccgcgacggctccgagcgcgcgttcgtg
atgccgagagactgtcccgtctgcggcactccgctcgcacccgcgaaggagggcgacgtc
gatctgcgctgcccgaacgcccgctcgtgccccgcgcaggtgcggggtcgggtcgagcac
atcggttcgcgtggcgcactcgacatcgaggcgctcggcgaggtgaccgcggcggcgctg
acacaggcggacgggggcgcacgtgcgccgctggacacggaggcagggctgttcgatctg
actctcgacgaactggtcccgatcgaggtcgtcgtccgggatgcggagaccggtgaaccg
aagctcgacgacgccaccggcgagccggtgcgtcgcgccccgttccgtcgcaacccgacg
cccgccgagcgcaagtccggactgctgacgccgcagccgtccgcgcaggcactcacgctg
ctcgacgagctcgagaaggcgaagacgaaggagctgtggcgtttcctcgtcgccctcaac
gtccgccatgtcggacccgttgcggcccgggcgctggcgcagtggttcggatccgtctcg
gcgatccgctcggcgagccgcgaggagctcgcggcggtcgagggagtgggcgggatcatc
gcggatgcggtcatcgcgtggttcgagatcgactggcaccgcgagatcgtcgagcgctgg
gaggcggcgggagcgcagctgtccacgcccggacaccccggtcccggcgccgccgtcgtc
gagggcggcgtgctcgagggactcacggtcgtggcgaccggcaccctcgagggctacacg
cgagagggcgcgcaggaggcgatcctcgcggccggcgggaaggcaggctccagcgtctcg
aagaagaccgacttcgtggcggcggggccgggcgccggatccaagctggcgaaggcagaa
cagctcggggtgcgcatcatcgacgccgcgcagttccgcatcctcgtggagcagggaccg
gcggcactcgacgccttggcgccggatgcgggctga
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