Macrococcus bovicus: QSV55_09475
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Entry
QSV55_09475 CDS
T09191
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mboc
Macrococcus bovicus
Pathway
mboc03030
DNA replication
mboc03410
Base excision repair
mboc03420
Nucleotide excision repair
mboc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mboc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QSV55_09475 (ligA)
03410 Base excision repair
QSV55_09475 (ligA)
03420 Nucleotide excision repair
QSV55_09475 (ligA)
03430 Mismatch repair
QSV55_09475 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mboc03032
]
QSV55_09475 (ligA)
03400 DNA repair and recombination proteins [BR:
mboc03400
]
QSV55_09475 (ligA)
Enzymes [BR:
mboc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QSV55_09475 (ligA)
DNA replication proteins [BR:
mboc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QSV55_09475 (ligA)
DNA repair and recombination proteins [BR:
mboc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QSV55_09475 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QSV55_09475 (ligA)
MMR (mismatch excision repair)
DNA ligase
QSV55_09475 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QSV55_09475 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Zn_ribbon_NUD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WJP97469
LinkDB
All DBs
Position
LI0213:complement(1726456..1728447)
Genome browser
AA seq
663 aa
AA seq
DB search
MMQQRVDELHRLLHQYNYEYHVLDTPSVPDSEYDKLLHELIAIEEAYPDLKTADSPTVRV
GGTPLSSFEKVRHDTPMLSLGNAFNEEDLRAFDRRVVDGVGRVDYMVELKIDGLAVSLKY
QEGRLVQGLTRGDGTTGENITENIKTIYAVPLVINEPLTFEVRGEAYMPRQSFIHLNKEK
EKKGEPLAANPRNAAAGSLRQLDSKLAAKRKLDIFLYSVNDLRELDVPSQSAALDRLDDL
GFKTNHERRLCQDIDEVLDYIRYWTEERNHLAYDIDGIVIKVNDLAKQEELGFTARSPRW
AIAYKFPAEEVITKLKDIEISVGRTGAVTPTAILEPVKVAGTTVGRASLHNEDLIRDKDI
RIGDEVVVRKAGDIIPEVVRPVLDRRPAGTLPYHMPAHCPACGHELVRIEGEVALRCINP
ACEAKLVEGVIHFVSRQAMNIDGLGERIVEQLFQAELIRDVADIYYLKREDLLPLDRMAD
KKVDKLLQAIEVSKTNSLERLLFGLGIRHLGAKASRILAEEYGSMDRLVTATEEELTAIH
EIGHKIAQSVVTYLHNDDIKELLLKLTEAGVNMTYTGTKVEVVSNTTFMNKTIVLTGKLE
IMTRTEATDKLTALGAKVTSSVTKKTDLVIAGEEAGSKLAKAESLGIEVWSEEQLINKLQ
EIG
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagcaaagagtagatgaattacaccgtttattgcaccagtataactatgaatat
cacgtgctggacacgccgtctgttcctgatagtgaatacgataaactgctccatgaactc
atcgcgattgaagaggcatatcccgatctgaagacagcggactcacccactgtccgggtc
ggcggaacaccgctgtcatcgtttgaaaaagtcagacatgatacaccgatgctcagtctc
ggcaatgcatttaatgaagaagacttgcgtgcatttgaccgtcgtgtggtggatggtgtc
ggccgagtggattacatggtggagctgaagatagacggactcgcagtttctctgaaatac
caggaaggccgtcttgttcaaggactgacccgaggggatggtacgacaggagagaatatc
actgagaatatcaagacgatatacgcagtaccgctcgttatcaatgaaccactgaccttt
gaagtgcgcggagaagcctatatgccccgccagtcattcattcatctcaacaaggaaaaa
gagaagaagggtgaaccgcttgccgcgaatccgcgtaatgcagcggcgggttcactcaga
cagcttgactccaagcttgctgctaaacgcaagctggatatcttcttgtatagtgtgaat
gatttacgtgaactggatgtgccgtcacagagcgcagcccttgatagactggatgatctc
ggctttaagacgaaccatgaacgcaggttatgtcaagatatcgatgaggtactggattat
attcgttactggacagaagaacggaatcatctggcctacgatatagacggtatcgtcatt
aaagtgaacgatctcgcgaagcaggaagaactcggtttcactgcaagatcaccacgctgg
gccatcgcttataagttcccggcagaagaagtcatcaccaagctgaaagatatcgaaatt
tcagtaggacggacgggtgccgtgacgccgaccgccatccttgaacccgtcaaagtagcg
gggacaacagtgggtcgtgcctcccttcataatgaagacctcatccgggacaaagacatt
cgtatcggtgacgaagtcgtggtccgtaaagcaggtgatattattccagaggttgtcaga
cctgtgcttgaccgtcgaccagccggcacgttaccctaccatatgccggcacactgcccg
gcctgcgggcatgaactggtgcgtattgaaggcgaagtggcactgcgctgtatcaatcca
gcctgcgaggcgaaactcgttgaaggtgtgatccattttgtgtcccgtcaggcgatgaat
atcgatggactcggtgaacggatcgttgaacagttattccaggcagaactgattcgtgat
gttgccgatatttactatctgaagcgtgaggatttactgccgcttgatcgtatggcagat
aagaaggtcgataaattgctgcaggccatcgaagtctcaaaaacgaattcactggagcgt
ctgttatttggtcttggcatcagacatctgggcgcgaaggccagccggattctggcagag
gaatacggttcaatggataggctggttactgcgacagaagaagagctgacagctatccat
gaaatcggtcataagattgctcagtcagtcgtcacctatctgcacaatgatgatataaaa
gagctgctgctgaagctgacagaagcaggggtcaacatgacttataccggcacgaaagta
gaagtggtcagcaatactacgttcatgaataagacgattgtcctgaccggcaagcttgag
atcatgacccgaacagaagccactgacaagctgacagcgctcggtgccaaagtgacgagc
agtgtcacaaagaagacagatctggttattgcaggtgaggaagcgggtagtaagctcgcg
aaggcagagtctctcggcattgaagtctggagtgaggaacaactcatcaacaaactacag
gaaataggttaa
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