Mannheimia bovis: ICJ55_10530
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Entry
ICJ55_10530 CDS
T07212
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mbos
Mannheimia bovis
Pathway
mbos03030
DNA replication
mbos03410
Base excision repair
mbos03420
Nucleotide excision repair
mbos03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mbos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ICJ55_10530 (ligA)
03410 Base excision repair
ICJ55_10530 (ligA)
03420 Nucleotide excision repair
ICJ55_10530 (ligA)
03430 Mismatch repair
ICJ55_10530 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbos03032
]
ICJ55_10530 (ligA)
03400 DNA repair and recombination proteins [BR:
mbos03400
]
ICJ55_10530 (ligA)
Enzymes [BR:
mbos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ICJ55_10530 (ligA)
DNA replication proteins [BR:
mbos03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ICJ55_10530 (ligA)
DNA repair and recombination proteins [BR:
mbos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ICJ55_10530 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ICJ55_10530 (ligA)
MMR (mismatch excision repair)
DNA ligase
ICJ55_10530 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ICJ55_10530 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
HHH_3
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QNS15161
UniProt:
A0A7H1C2F6
LinkDB
All DBs
Position
2126373..2128430
Genome browser
AA seq
685 aa
AA seq
DB search
MSLFSQGSLFEENATSALVEQIEQLRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNIE
WQHPELITTDSPTQRVGAKPLSGFAQVTHEIPMLSLDNAFGDDDLDGFLRRMESYISVNP
NELAFCCEPKLDGLAVSILYENGLLTRAATRGDGTTGEDITANIRTIRNIPLKLNTLNPP
ARLEIRGEVFMPQAGFNELNEKALAKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAY
GIGVYESDDELPNTQFERLQWLKSLGIPVNNEIRLAQGKTELLAYYAEIQAKRPTLGYDI
DGTVLKVNDVALQEQLGFISRSPRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLE
PVFVAGVTVSNATLHNGDEIERLGIVIGDTVIIRRAGDVIPQITGVVAERRPENAKKIEF
PTACPICNSAVVRVEGEAVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMA
RELIKTPADLFKLDHTTLMRLERMGEKSAQNALNSIEKAKNTTLPRFLFSLGIREVGEAT
ALNLANYFGSLEAIRQANFEQLKEVQDVGEVVANRIVSFWQEPHNVAVVEDLIAQGVHWE
DVVKTEIADNPLKDKNVVLTGTLTQLTRDEAKALLQSLGCKVSGSISGKTDYLIAGEKAG
SKLAKAQELGIQILTEQDFIDLTTH
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgtctttatttagtcaaggctctttatttgaagaaaatgccacatctgcattagttgag
caaatcgaacaacttcgccaaacgttacgtcaatacgagtatgaatatcacgttttagat
aatcctagcgtaccggatgcggaatacgaccgcttaatgaatgagctgaaaaatattgaa
tggcagcacccggaactgattactactgattcgccaacgcaacgggtaggtgcaaaacca
ttatcaggttttgctcaagttacacacgaaattccaatgctttcgttagataacgctttt
ggtgatgacgatctagacggctttttacgtcgaatggagagctatatttccgttaatcca
aatgagttagcattttgctgcgagccaaaattagatggtttagcggtgagtattttgtat
gaaaatggcttgctcacccgtgcagctacccgaggcgatggcacaacaggcgaagatatt
accgccaatatccgcaccattcgtaatattccgttaaaactcaacacactcaatccgccg
gctcgtttagaaattcgtggcgaagtttttatgccgcaggcaggctttaatgagttaaat
gaaaaagccttagccaaaggcgagaaaacctttgccaacccccgtaatgcagcggcgggg
tcgttacgccagttagatccgaaaattacccgccaacgtccacttgtgctgaatgcttac
ggcattggcgtttatgaaagtgatgacgaattgccaaatactcagtttgaacgtttacaa
tggctgaaatcgcttggcattcctgtaaataatgaaatccgcttagctcaaggcaaaaca
gaactcttggcgtattatgccgaaatccaagctaaacgcccaacgctaggctatgatatt
gatggcacggtattgaaagtcaatgatgtcgccttacaagagcaacttggttttatctcc
cgttctcctcgctgggcgattgcttacaaattccctgcacaagaagaaatgaccattttg
aaagaagtagatttccaagtagggagaacaggggcaatcacgcctgtagcgaaattagag
cctgtttttgtagcgggtgtaacggtaagtaatgccaccttacataatggcgatgaaatt
gagcgtttaggtattgtgattggtgatactgtgattattcgccgagcaggtgatgtaatt
ccacaaattacaggtgtagttgctgaacgtcgtcctgaaaatgcaaaaaaaattgaattt
ccgaccgcttgccctatctgtaactctgcggttgttcgggtagaaggcgaggctgtcgca
cgttgtacgggtggcttattctgtggggctcagcgtaaagaggcattgaaacattttgtt
tctcgcaaagcgatggacattgacggcgtaggcgaaaaactgattgagcaattaatggct
cgtgagttaattaaaactccagccgatctattcaagctcgatcatacaaccttaatgcga
ttagaacgaatgggcgaaaaatccgctcaaaatgccctaaatagtatcgaaaaagcgaaa
aatactactcttcctcgctttttattctcattaggtattcgggaagttggcgaggcaacc
gctctcaacttagcaaattactttggcagcctagaagcaatccgccaagccaattttgag
caactcaaagaggtgcaagatgtgggcgaagtggtagcaaaccgcattgtgagtttctgg
caagaaccgcataacgttgcagtggtggaagatctaattgctcaaggcgtacattgggaa
gatgtggtgaaaacagaaattgccgataatccgctaaaagataaaaacgtcgttttaacc
ggcacacttactcagcttactcgtgatgaagccaaagctctattacaaagtttaggttgc
aaagtttcgggttctatttccggcaaaaccgattacctcatcgcaggcgaaaaagcagga
tcaaaactggctaaagcccaagagctaggtattcagattttaaccgaacaagattttatt
gacctcacaacgcattaa
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