Maize bushy stunt phytoplasma: MBSPM3_v1c2600
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Entry
MBSPM3_v1c2600 CDS
T04456
Symbol
lig
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mbp
Maize bushy stunt phytoplasma
Pathway
mbp03030
DNA replication
mbp03410
Base excision repair
mbp03420
Nucleotide excision repair
mbp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MBSPM3_v1c2600 (lig)
03410 Base excision repair
MBSPM3_v1c2600 (lig)
03420 Nucleotide excision repair
MBSPM3_v1c2600 (lig)
03430 Mismatch repair
MBSPM3_v1c2600 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbp03032
]
MBSPM3_v1c2600 (lig)
03400 DNA repair and recombination proteins [BR:
mbp03400
]
MBSPM3_v1c2600 (lig)
Enzymes [BR:
mbp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MBSPM3_v1c2600 (lig)
DNA replication proteins [BR:
mbp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MBSPM3_v1c2600 (lig)
DNA repair and recombination proteins [BR:
mbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MBSPM3_v1c2600 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MBSPM3_v1c2600 (lig)
MMR (mismatch excision repair)
DNA ligase
MBSPM3_v1c2600 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MBSPM3_v1c2600 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
BRCT_2
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
AOF54779
LinkDB
All DBs
Position
complement(283045..285060)
Genome browser
AA seq
671 aa
AA seq
DB search
MQNFDLIKQKIKSLVKQLTKANYQYYNLSNPDLSDQQYDALLKELINLETRYPQFKLPYS
PTLKIGGFVEKKFSTIKHKTPMMSLGNVFNLKELKAFYDRIVKKIPTFSLLTELKIDGVA
ISLKYQKGILVQALTRGNGIWGEDITKNAQTIKTIPLRLKEDLDLEVRGEIYLSHPAFEK
LNAQRKQENKPLFSNPRNAASGTLRQLNSAIVAQRNLSIFVYGISDPYLTKPTQKETLDF
LTSLGFTTNPHYYCVSNFENLLSVIEKYKTIKEQLTYDTDGIVIKINELAFHSLIGATAK
APRWATAYKFATITSQSIVKNIIFQVGRTGVITPVCKIMPVMVDGSLVSKVVLHNYDYIC
KKDIRIKDHVIVHKAGSVIPEILEVIKSKRTDLQKPTLMIEKCPACQTILEKQPGGVDYF
CLNPNCREQKIQKLIHFVSKNAMDINVLGEQTIIAFFDKNLIAKPSDLYLLKKHKHILQE
MPGFGAKKITNILDSIEASKQKGFEDVLFALGIKHIGKKVSQVLAKHFQTIENLQQATPE
LITQIRELGIKIAQSIQQYFSNSCNLEEVFKLKTLGVSFQSTNPQNPTTQTIFTNKKIVL
TGTLQKNSRLQIQQILEQMGAIITNSLSLQTNYLIVGINAGSKLTKAQKLQIPIIEEKEL
QQIIENSQIKL
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattttgatctaattaaacaaaaaattaaatccttggtaaaacaactcaccaaa
gccaattaccaatactataatctaagcaatcccgatctaagcgaccaacaatacgatgct
ttactcaaagaactaatcaatttagaaacccgctatccccagttcaaacttccttatagc
cccactttaaaaattggtggttttgtagaaaaaaaatttagcaccattaagcacaaaact
ccaatgatgtctttgggaaatgtttttaatcttaaagaactcaaagctttttatgaccgt
attgtcaaaaaaattcctactttttctttgttaactgaattaaaaattgacggcgtagcg
ataagtttaaaatatcaaaaaggcattttagtgcaagctttaacaagaggaaacggtatt
tggggagaagacattaccaaaaatgcccagaccattaaaaccattcctttaagattaaaa
gaagatctcgatttagaagttaggggagaaatttatttatcccatcccgcttttgaaaaa
ctcaacgcccaaagaaaacaagaaaacaaaccccttttttccaatcccagaaatgctgct
tcaggaactttaagacaacttaattcagcaattgttgctcaaagaaatttgtctattttt
gtctatggcatttcagatccttatttgactaaacctacccaaaaagagactttggatttt
ttaacttctttaggatttaccacaaatccccattattattgcgtctctaattttgaaaat
ttgcttagtgtaattgaaaaatacaaaaccattaaggaacaacttacctacgatactgat
ggaattgtcattaaaattaacgagcttgcctttcattctttaattggtgccactgccaaa
gctcccagatgggcaactgcttacaaatttgcaactattacaagccaaagcatagtaaaa
aacatcatttttcaagtgggacgcactggtgttataactccagtttgcaaaattatgcct
gttatggtagatggaagtttggtctcaaaagtggttttacataattatgactacatttgc
aaaaaagatatcagaataaaagaccatgtcatagttcataaagcaggctcggttattcct
gaaattttagaagttatcaaaagcaaaagaactgatttgcaaaaacccactttaatgatt
gaaaaatgtcctgcttgtcaaacaattttagaaaaacaaccaggtggagttgattatttt
tgcctcaacccaaattgtcgcgagcaaaaaatccaaaaactcattcattttgtatccaaa
aatgctatggatatcaacgttttaggagaacagaccatcattgctttttttgataaaaac
ctaattgccaaaccttctgacctttatttattaaaaaaacacaagcatattttgcaagaa
atgccaggttttggcgctaaaaaaattactaacattttggattctatcgaagcaagcaag
caaaaaggatttgaagatgttttatttgctttggggatcaaacatattggcaaaaaagta
tctcaagttttggcaaaacattttcaaactatcgaaaacctccaacaagccacaccagaa
ttaattactcaaataagagaattaggaataaaaattgcccaaagcatccaacaatacttt
tccaattcttgtaatttagaagaggttttcaaactcaaaacactaggagtttcttttcaa
agcactaacccccaaaatccaactacccaaactatttttaccaacaaaaaaattgtttta
acaggaactctccaaaaaaattcccgtcttcaaatccaacaaatcttagaacaaatggga
gcaattataactaacagtttatctttacaaaccaattatttaatagttggcatcaatgct
ggttctaaactaaccaaagcccaaaaactccaaattcctattatcgaagaaaaagaatta
caacaaattatagaaaatagccaaattaaattataa
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