Mycobacterium branderi: MBRA_48780
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Entry
MBRA_48780 CDS
T07397
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mbrd
Mycobacterium branderi
Pathway
mbrd03030
DNA replication
mbrd03410
Base excision repair
mbrd03420
Nucleotide excision repair
mbrd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mbrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MBRA_48780 (ligA)
03410 Base excision repair
MBRA_48780 (ligA)
03420 Nucleotide excision repair
MBRA_48780 (ligA)
03430 Mismatch repair
MBRA_48780 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbrd03032
]
MBRA_48780 (ligA)
03400 DNA repair and recombination proteins [BR:
mbrd03400
]
MBRA_48780 (ligA)
Enzymes [BR:
mbrd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MBRA_48780 (ligA)
DNA replication proteins [BR:
mbrd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MBRA_48780 (ligA)
DNA repair and recombination proteins [BR:
mbrd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MBRA_48780 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MBRA_48780 (ligA)
MMR (mismatch excision repair)
DNA ligase
MBRA_48780 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MBRA_48780 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BBZ14683
UniProt:
A0A7I7WDW0
LinkDB
All DBs
Position
complement(4996127..4998214)
Genome browser
AA seq
695 aa
AA seq
DB search
MSAAEVDSVPPEVRRQWRELADEVREHQFRYYVRDAPIISDAEFDELLRRLEALEDEHPE
LRTPDSPTQLVGGAGFATDFMPAEHLERMLSLDNVFSAEEFDAWAARVRAEVGDDAHYLC
ELKIDGVALSLVYRDGRLTRAATRGDGRTGEDVTLNARTIDDVPERLKANNDYPVPAVLE
VRGEVFFRLADFEALNAALVEDGKTPFANPRNSAAGSLRQKDPAVTARRKLRMICHGLGH
AEGFRPASLHDAYLALKAWGLPVSEHTTRVDGAAGVHERIAYWGEHRHDVDHEIDGVVVK
VDEVSLQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRVTPFAYMTPVKVAG
STVGLATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEREFVMPTTCPE
CGTTLAPAKEGDADIRCANSRSCPAQLRERVFHVASRGALDIEGLGYEAGIALLKAKVIA
DEGDLFTLTEDDLLQTDLFKTKAGTLSANGKRLLANLDKAKQQPLWRVLVALSIRHVGPT
AARALATEFGSLDAITSASTGQLAAVEGVGPTIADAVKEWFTVDWHRAIVDKWRAAGVRM
ADERDTSVPRTLEGLSIVVTGSLVGFSRDDAKEAIVARGGKAAGSVSKKTAYVVAGDSPG
SKYDKAVELGVPILDEDGFRRLLDNGPAGISGTAE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcagcagaggttgactcggtcccgccggaggtccgccggcaatggcgggagctg
gccgacgaggtgcgcgagcaccagttccgctactacgtgcgcgacgcgccgatcatctcc
gacgccgagttcgacgagctgttgcgccgcctggaagccctcgaggacgagcatccggag
ctgcggacgcctgattcacccacccagctggtcggcggcgccggctttgccaccgatttc
atgccggccgagcacctggagcggatgctgtcgctggacaacgtgttcagcgccgaagag
ttcgacgcgtgggcggcccgggtgcgcgccgaggtgggcgacgacgcccactacctgtgc
gagctgaaaatcgacggcgtcgcactgtcgctggtatatcgcgatggccgtctgacccgg
gcggccacccggggcgatggccgcaccggcgaggacgtcacactcaacgcccgcaccatc
gacgacgtccccgagcgcctgaaagccaacaatgactacccggtgcccgccgtgctcgaa
gtgcgcggcgaggtcttcttccggctggccgacttcgaggcgctcaacgccgcgctggtc
gaggacggcaagacaccgttcgccaacccgcgcaacagcgcggcgggatcgctgcggcag
aaggaccccgcggtgaccgcccgccgcaagctgcggatgatctgccacggtctgggacac
gccgaaggcttccggccggccagcctgcacgacgcctacctcgcgctgaaagcctggggc
ctgccggtttccgagcacaccacccgggtggacggagcggccggcgtgcacgagcgcatc
gcctactggggcgagcaccgccacgacgtcgaccacgaaatcgacggtgtagtggtcaaa
gtcgacgaagtgtcattgcagcgccggctcggctcgacgtcgcgggcgccgcgctgggcc
atcgcctacaagtacccgcctgaggaggcgcagaccaagctgctcgacatccgggtgaac
gtcgggcgcaccgggcgggtcaccccgttcgcctacatgacaccggtgaaagtcgccggg
tcgacggtcgggttggcgacgctgcacaacgcctcggaagtcaaacgcaagggcgtcctc
atcggcgacaccgtggtgatccgcaaggccggcgacgtgattcccgaagtgctggggccg
gtcgtcgacctgcgcgacgggtcggaacgcgaattcgtcatgcccacaacgtgtcccgag
tgcggcaccacgctggcgcccgccaaggagggcgacgccgacatccgctgcgccaactcg
cggtcgtgtccggcgcagctgcgggagcgggtgtttcacgtcgcgagccgcggcgcgctg
gacatcgaggggctgggttacgaggcgggcatcgcgctgctgaaggcgaaagtcattgcc
gacgaaggtgatctgttcacgctgacggaggacgatctgctccaaacggacctattcaaa
accaaagccggcacgctgtcggccaacggcaagcggctgctggccaacctcgacaaggcc
aagcagcagccgctgtggcgggtgctggtggcactgtccatccggcacgtcgggcccacg
gccgcccgcgccctggccaccgaattcggcagcctggacgccatcacgtcggcgtccacc
gggcagctggccgccgtcgagggagtggggccgaccatcgccgacgcggtcaaagagtgg
ttcaccgtcgactggcatcgcgcgatcgtcgacaagtggcgtgccgccggggtgcggatg
gccgacgagcgcgacaccagcgtgccccgcacgctggaggggctgtcgatcgtggtgacc
gggtcgctggtcggcttctcccgcgacgacgccaaggaggccatcgtcgcgcggggcggc
aaggccgccggctcggtgtcgaagaaaaccgcctacgtggtcgccggggattcgcccgga
tccaaatacgacaaggccgtcgaactcggcgtgccgatcctcgacgaggacggttttcgc
cgattgctggacaacgggcccgccgggatttcgggcacggccgaatag
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