Microbulbifer bruguierae: PVT68_03725
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Entry
PVT68_03725 CDS
T09733
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mbrg
Microbulbifer bruguierae
Pathway
mbrg03030
DNA replication
mbrg03410
Base excision repair
mbrg03420
Nucleotide excision repair
mbrg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mbrg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PVT68_03725 (ligA)
03410 Base excision repair
PVT68_03725 (ligA)
03420 Nucleotide excision repair
PVT68_03725 (ligA)
03430 Mismatch repair
PVT68_03725 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbrg03032
]
PVT68_03725 (ligA)
03400 DNA repair and recombination proteins [BR:
mbrg03400
]
PVT68_03725 (ligA)
Enzymes [BR:
mbrg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PVT68_03725 (ligA)
DNA replication proteins [BR:
mbrg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PVT68_03725 (ligA)
DNA repair and recombination proteins [BR:
mbrg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PVT68_03725 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PVT68_03725 (ligA)
MMR (mismatch excision repair)
DNA ligase
PVT68_03725 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PVT68_03725 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
5_3_exonuc
ABC_transp_aux
PTCB-BRCT
AphA_like
Motif
Other DBs
NCBI-ProteinID:
WGL17413
UniProt:
A0ABY8NF24
LinkDB
All DBs
Position
complement(866751..868784)
Genome browser
AA seq
677 aa
AA seq
DB search
MTKNIPTEKQQRAQELHDILNRANYQYYVLDSPELPDAEFDRCMRELQQLEAEFPALITP
DSPTQRVGAAPLAAFDQITHEMPMLSLDNAFSDEELEDFDRRIRERLNSPASVEYACEPK
LDGIAISLLYRDGLLQRAATRGDGSVGENITQNVRTIHSVPLKLLASDVPAVLEVRGEIY
MPKAGFAALNEKARAAGEKLFVNPRNAAAGSLRQLDSRITAQRPLELCAYSVGLVEGDLP
ERHSDILEQLNRWGFRINSEMAVVDDIKGCIDYFRQLGDKRAQLPYDIDGIVFKVNSIPL
QKRLGFVARAPRWATAYKFPAQEEMTRLLDVEFQVGRTGAVTPVARLEPVFVGGVTVSNA
TLHNRDEIERLGVKIGDTVIIRRAGDVIPQVVSVVEIKRPADARDIEFPTHCPVCDSPVE
ATPGEAVARCSGGLICSAQRKQAIKHFAARRAMDIDGLGDKLVEQLVDEGLLKSVSGLYH
LSLPPLIALERMGEKSAQNLLDALEHSKHTTLPKFLYALGIREVGEATARNLARHFGDLE
HLMEADTEALQQVDDVGPVVAHYVAEFFEQPHNLEELAALQQAGVHWESEKQDTSAQPLA
GQTWVLTGKLETLSRNEAKDYLQRLGAKVAGSVSANTHTVVAGPGAGSKLNKARDLALPI
LDEEGLMAMLREQGIEI
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaatatccccactgaaaaacagcagcgtgcacaggaactgcacgacattctc
aatcgtgccaactaccaatactacgtgctcgatagcccggaactgccggatgcggaattt
gaccgttgcatgcgtgaactgcagcagctggaggcggagttccctgcgctgatcactccg
gattcccccacccagcgtgtgggcgcggcaccgctggcggcttttgatcagatcacccac
gaaatgccaatgctgtcgctggataacgcattcagcgatgaagaactggaagattttgat
cgccgtattcgcgagcgcctgaatagtccggcgtcggtggaatatgcctgcgagcccaag
cttgatggtattgcgatcagcctgctgtatcgcgacggcctgttacagcgggcggcgacc
cgcggggacggtagcgtgggggaaaatatcacccagaatgtgcgcaccatccactcggtg
cccctgaaactgctggcaagtgacgtgcctgcagtgctggaggtgcgaggggagatttat
atgcccaaggcaggttttgcggcgctgaatgaaaaggcccgcgctgccggtgaaaagctg
ttcgtaaatccccgcaacgcagcagccggcagtctgcgccagctggattctagaattacc
gcacagcgaccgctggagctgtgtgcgtatagcgtggggctggtagagggcgatttgcct
gagcgtcactctgacattcttgaacagcttaaccgttgggggtttcgtatcaacagcgaa
atggcagtggtggacgatatcaagggctgcatcgactacttccgtcagctgggggataag
cgcgcacaactgccctacgatatcgatggcatcgtattcaaggtcaacagtattccgcta
caaaagcgactggggtttgtggcgcgggcgccgcgctgggctacggcttataagtttcct
gcccaagaggaaatgacccggttgctggatgtggaattccaggtaggccgaactggtgcg
gtaacgccggtggcgcgacttgagcccgtatttgtcggtggggtaaccgtgtccaatgcg
accctacacaatcgcgacgaaatcgagcgtttgggagtgaaaatcggtgataccgtgatc
attcgccgcgccggtgatgtgattccgcaagtggtgtcggtggtggaaattaagcgcccg
gctgatgcccgcgacatcgagtttcccactcattgcccggtgtgtgattctcccgtggag
gcaacgcccggtgaggctgttgcccgttgcagtggtggtcttatctgcagtgcacagcgc
aagcaggcgataaaacatttcgcggcgcggcgggccatggacatcgacggcctgggggac
aaactggtagaacagctggtggatgagggtttgctgaaatcagtatccggcctttatcac
ctgtcgctgccgcccctgatcgctctggagcggatgggtgaaaaatctgcgcagaatctg
ctggatgcgctggagcacagtaaacacacaacactgccaaaatttctctatgcattgggg
attcgcgaagtaggagaggccactgcgcgtaatctggcgcggcactttggcgacctcgag
catttgatggaagcggatacggaagccctgcagcaggtggacgatgtggggccagtggtg
gcgcactatgtggccgaatttttcgagcagccacacaacctggaagagctggccgctctg
caacaggccggggtgcactgggaatcggaaaaacaggacacaagcgcacagcccctggcg
gggcagacctgggtgctgaccggcaaactggagaccctgtctcgcaacgaggccaaggat
tatctgcagcgccttggggccaaggtcgcaggcagtgtatcggcgaatacgcatacggtg
gtggcgggacctggcgctggctccaagctaaacaaggcccgggatctggcgctgccgata
ctggacgaggaaggcttgatggcgatgctgcgcgagcagggtatcgagatttaa
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