Marinobacter sp. BSs20148: MRBBS_1721
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Entry
MRBBS_1721 CDS
T02323
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mbs
Marinobacter sp. BSs20148
Pathway
mbs03030
DNA replication
mbs03410
Base excision repair
mbs03420
Nucleotide excision repair
mbs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MRBBS_1721 (ligA)
03410 Base excision repair
MRBBS_1721 (ligA)
03420 Nucleotide excision repair
MRBBS_1721 (ligA)
03430 Mismatch repair
MRBBS_1721 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbs03032
]
MRBBS_1721 (ligA)
03400 DNA repair and recombination proteins [BR:
mbs03400
]
MRBBS_1721 (ligA)
Enzymes [BR:
mbs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MRBBS_1721 (ligA)
DNA replication proteins [BR:
mbs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MRBBS_1721 (ligA)
DNA repair and recombination proteins [BR:
mbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MRBBS_1721 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MRBBS_1721 (ligA)
MMR (mismatch excision repair)
DNA ligase
MRBBS_1721 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MRBBS_1721 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_ligase
RNA_pol_A_CTD
DUF4796_N
DUF5795
Motif
Other DBs
NCBI-ProteinID:
AFP30658
UniProt:
M1FJ75
LinkDB
All DBs
Position
1838699..1840795
Genome browser
AA seq
698 aa
AA seq
DB search
MSSVSTSVRDRVDQLRTTITDHNHHYYVLDDPQVPDAEYDRLFRELQAREAEYPELATAT
SPTQRVGSAVETNFAQVIHRIPMLSLDNAFSADELRDFDRRVRERLNRGKTAGESSTKEH
STEEEGSKEERTIEYVCEPKLDGLAVSLHYQNGELVRAATRGDGYTGEDITANIRTIASV
PLTLRGGDFPQTVEVRGEVYMPRAGFDRLNQRLAGRGEKTFVNPRNAAAGSLRQKKSSVT
ARRPLEMCAYSVAVSDDSALPPTHWKGLQQVSEWGFRINPEMSLANGADQCLEAYEALMA
KRDRLPYEIDGIVFKVNRLDLQQQLGFVSRAPRWAIAQKFPAEEELTVVESVEFQVGRTG
AITPVARLKPVFVGGVTVSNATLHNMDEVRRLDLHIGDTVFIRRAGDVIPKVVKVVQDKR
PVDAWVIELPAQCPACGSDVVQIEGEVIARCSGGLFCPAQRKEAIRHYASRKALDIEGLG
DKWVDILVDSEKVETIADLYRLRKADLIGLERMGDKSASNLIAAIDASRQPLLWRFLYAL
GIREVGEATAKGLAGYFGSLEAIAEADENALQAVSDVGPIVAGHLRSFFEQPHNQEILQS
LKQAGVIWQTQEITAASMPLHGQTWVLTGTMEQMTRDQAKQKLEGLGAKVAGSVSKKTSC
VVAGEAAGSKLTKAQQLGVEVLSEQGLLDLLRGHDVEV
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgagctcagtcagtaccagcgtgcgtgaccgggttgaccaactgcgcacaaccattacc
gatcataaccaccattattacgtgcttgacgatccgcaagttcccgacgccgagtacgat
cggctattccgtgaattgcaggcgcgagaagccgagtatccggaattggcgacggcaacg
tcgccgacccagcgtgtaggctccgcggtagaaaccaactttgcgcaagtgatccatcgt
atccccatgttgtctttggataatgccttcagcgccgatgagttacgggattttgatcgc
cgcgtgcgtgagcgcctgaaccggggcaaaaccgcgggtgaaagcagcactaaggaacac
agcacggaggaagagggctcgaaggaagagagaaccatagagtacgtgtgcgaacccaag
ctcgacggcctggcggtcagtctgcattaccagaacggagagctagttcgcgctgccacc
cgcggcgatggttacaccggtgaagatattaccgccaatatacggaccattgcgtctgtg
cctctcaccctgcgcggtggtgattttccgcaaaccgtagaggtgcgaggcgaggtgtat
atgcctcgcgccggttttgatcggcttaaccagcgactggcggggcgtggtgagaaaacc
tttgtaaatccccgcaacgccgctgccggcagtctgcgccagaaaaagtccagcgtgacc
gccaggcgcccattggaaatgtgcgcctacagcgtagcggtttctgacgattcagcgctg
ccgcctacacactggaaaggtttgcagcaggtcagtgagtggggctttcgcatcaaccct
gaaatgtctctcgccaatggggccgatcagtgccttgaggcctacgaagcattgatggcc
aaacgcgacagacttccttatgaaatcgacggtattgtgttcaaggtaaaccgtctggat
cttcagcagcagctaggctttgtcagccgcgcgccgcgctgggcgatcgcacaaaaattc
ccggctgaggaagagctgacggtagttgaaagcgtggagtttcaggtcggccgtaccggc
gctattacgcccgtggcccgcttaaaaccagtatttgtcggtggtgttacggtatccaac
gcaactttgcacaatatggacgaagtgcgacggctggatttgcacatcggcgacaccgtg
tttattcgccgcgccggtgatgttattccaaaagtggtcaaagtggtgcaagacaaacgg
cccgtcgatgcctgggtaatagagcttccggcgcaatgcccggcgtgcggttcagacgtt
gtacagattgaaggcgaagtgattgcccgttgttctggtggccttttttgtccggctcag
cgcaaagaagccatccgccattacgcatcacgtaaagcgctcgacatagaaggtctgggt
gacaagtgggtggatattctggtggacagtgaaaaggttgaaaccattgccgatctgtat
cggttgcgcaaagcagacctgatcgggctggagcgcatgggcgacaagtctgcgagtaat
ttgattgctgctattgatgcctctcgccagcctttgttgtggcggtttctctacgcgctg
ggtattcgtgaagtgggcgaggccactgccaaaggccttgccggctactttggcagtctg
gaggctattgccgaagccgatgaaaacgccctacaagcagtgtctgacgttgggcccatt
gtggctgggcacctgcgcagtttttttgagcagccccataaccaggaaattctgcagagt
ttgaaacaggccggcgtgatctggcaaacccaggaaattactgcggccagtatgcctctg
catgggcaaacctgggtgctgaccggaactatggagcagatgacccgcgaccaggcaaaa
caaaagctagaaggtttgggcgcaaaagtggcaggcagcgtgtcgaaaaagacgtcgtgc
gtggtggccggtgaagcggcgggttccaaactgaccaaagcgcagcagttaggcgttgag
gttttgagtgagcagggtctattagacctgctgcgtgggcatgacgtggaggtctga
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