Methylococcus capsulatus: MCA2438
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Entry
MCA2438 CDS
T00205
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mca
Methylococcus capsulatus
Pathway
mca03030
DNA replication
mca03410
Base excision repair
mca03420
Nucleotide excision repair
mca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MCA2438 (ligA)
03410 Base excision repair
MCA2438 (ligA)
03420 Nucleotide excision repair
MCA2438 (ligA)
03430 Mismatch repair
MCA2438 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mca03032
]
MCA2438 (ligA)
03400 DNA repair and recombination proteins [BR:
mca03400
]
MCA2438 (ligA)
Enzymes [BR:
mca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MCA2438 (ligA)
DNA replication proteins [BR:
mca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MCA2438 (ligA)
DNA repair and recombination proteins [BR:
mca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MCA2438 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MCA2438 (ligA)
MMR (mismatch excision repair)
DNA ligase
MCA2438 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MCA2438 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
YiiM_3-alpha
Motif
Other DBs
NCBI-ProteinID:
AAU91453
UniProt:
Q604U8
LinkDB
All DBs
Position
complement(2616921..2618942)
Genome browser
AA seq
673 aa
AA seq
DB search
MSVPAEVVEKARKLREEIEFHNVRYYRLDDPLITDAEYDRLMAELLAIEARYPELVTPDS
PTQRVGAPPVEAFTEVRHEVPMLSLENAFSEEDLTAFDRRVRKELSRDTLEYVAEPKLDG
LAVNLLYQDGVLVRAATRGDGEVGEDVTHNVRAVRAIPLRLKGEDFPDRFEARGEVFMPK
RGFLALNERARRSGEKTFVNPRNAAAGSLRQLDARVTASRPLSFYAYGIGAFPDARLPAT
QHELLESLQRWGLPVSPEYRVVRGAAGCLEYYRSLGERRHDLPYDIDGVVYKVDDLKAQA
GLGFVSRAPRWAIAHKFPAEEARTRVVGIDVQVGRTGVLTPVARLEPVFVGGVTVTNATL
HNADEIRRKDVRPGDTVIVRRAGDVIPEIVRVVPELRKPGAEPFRMPEVCPECGSAVEAE
PGEVLARCSGGLYCPAQHKESIKHFASRRAMDIEGLGDKLVDQLVGRKLIATVADLYRLD
LDRLAGLDRMGEKSAANLLAALERSKRTTLARFLYALGIRDVGEVTAKVLSEHFGSLEAL
MEATEEELLAVADVGPVVSRHIRLFFAQPHNREVISQLLACGVSWEKPAPAPRKLPLQGL
VFVLTGTLASMSRDEARARLEALGAKCTGSVSRNTSFVVAGSEPGSKLDKASELGVPVLD
EKGFLDLLERGRP
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgttcctgccgaagtggtcgaaaaagcccgcaaactgcgcgaagaaatcgagttt
cataacgttcgttactaccggctcgacgatcccctgatcaccgacgccgaatacgaccgc
ctgatggcggaactgcttgccatcgaggcccgttatcccgagctcgtcacacccgattcg
cccacccaacgggtaggcgctcctccggtcgaagctttcactgaggttcgccacgaagtg
cccatgctgtcgctggagaatgctttcagtgaggaggatctcaccgcattcgaccggcgg
gtacgcaaggagctgtcccgggatacgctcgaatacgtcgcggagccgaagctcgacggg
ctcgccgtcaatttgctctaccaggacggcgttctggtccgagccgccacccgcggtgac
ggggaagtcggggaggatgtgacgcacaacgtccgggcggttcgggcgatccctctgcgg
ctaaagggcgaagactttccggaccgtttcgaggcgcggggtgaagtgttcatgcccaaa
cggggctttctcgccctcaacgagcgcgcccgccgcagcggagagaaaacgttcgtgaat
ccgcgcaacgccgcggcgggcagcctgcgccagctcgacgcgagggtcacggcgtcgcgt
cccttgtccttttacgcctatggtattggggcgtttccggacgccagactccccgccacc
cagcatgaactcctcgaatccctgcaacgctgggggttgccggtttcgccggagtatcgc
gtcgttcggggagcagccggttgtcttgagtactatcgctcgctgggggagcgccgtcac
gatctgccgtacgatatcgacggcgtcgtatacaaggtcgacgacctgaaggcccaggcc
gggctgggattcgtctcgcgcgccccccgctgggccatcgcccacaagtttcccgccgag
gaggcgagaacgcgggtcgtgggcatcgacgtccaggtgggacgtaccggcgtcctgact
cccgtggcaaggctggaaccggtgttcgttggcggggtcaccgtcactaacgcgaccctg
cacaatgccgacgagatccgcaggaaggacgtccggcccggggacaccgtgatcgtgagg
cgggccggggacgtcattccagaaatcgtccgggtcgttccggaactgcggaagccgggg
gccgaaccgtttcggatgccggaagtttgtcccgaatgcggctccgccgtagaggcggaa
ccgggcgaggtgttggcccgctgcagcggtggcctgtactgtcctgcccagcacaaagag
tcgatcaagcacttcgcgtcccggcgggcgatggatatcgaagggctgggcgacaaactg
gtcgatcagctggtgggcagaaagctgatcgcaacggtggctgacctttaccgcctcgat
ctggaccggcttgcggggctggaccggatgggggagaaatccgccgccaatctgctggct
gcgttggagcgcagcaagcgcaccacgctggcgcgcttcctttatgcgctgggcatccgc
gatgtgggcgaggtgacggccaaggtactttcggagcatttcggttccctcgaggcgttg
atggaggctaccgaagaagagcttctggccgttgccgatgtcggcccggtggtgagccgc
cacatccggctgtttttcgctcagcctcacaaccgcgaggtgatctcgcaactgctggcg
tgcggcgtaagctgggagaagccggcgccggcaccgaggaagctgccgctgcaggggctg
gttttcgtgctcaccggcacgttggcctcgatgagccgggacgaagcgcgagcccggctc
gaagctctcggggcgaaatgcaccggcagcgtctccaggaacaccagtttcgtcgttgcc
ggttcggaaccgggttcgaaactggacaaagcctccgaactcggcgtcccggtgttggac
gagaagggcttcctagatctgcttgagcgggggcggccgtaa
DBGET
integrated database retrieval system
