Mangrovimonas cancribranchiae: R3L15_07425
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Entry
R3L15_07425 CDS
T10204
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcaa Mangrovimonas cancribranchiae
Pathway
mcaa03030
DNA replication
mcaa03410
Base excision repair
mcaa03420
Nucleotide excision repair
mcaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R3L15_07425 (ligA)
03410 Base excision repair
R3L15_07425 (ligA)
03420 Nucleotide excision repair
R3L15_07425 (ligA)
03430 Mismatch repair
R3L15_07425 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcaa03032
]
R3L15_07425 (ligA)
03400 DNA repair and recombination proteins [BR:
mcaa03400
]
R3L15_07425 (ligA)
Enzymes [BR:
mcaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
R3L15_07425 (ligA)
DNA replication proteins [BR:
mcaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R3L15_07425 (ligA)
DNA repair and recombination proteins [BR:
mcaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
R3L15_07425 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R3L15_07425 (ligA)
MMR (mismatch excision repair)
DNA ligase
R3L15_07425 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R3L15_07425 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
5_3_exonuc
DUF72
Bac_small_YrzI
Motif
Other DBs
NCBI-ProteinID:
WXA11968
UniProt:
A0AAU6P3D0
LinkDB
All DBs
Position
complement(1661231..1663231)
Genome browser
AA seq
666 aa
AA seq
DB search
MSQNIQQQIQQLRDELREHNYNYYVLDNPVISDYDFDMKLKQLQELEAKYPEFYDANSPS
LRVGGEVTKNFETVVHESRMYSLDNSYSKEDLEDWETRIKKLVDGDVMYTCELKYDGASM
NLTYENGTLVKAVTRGDGFQGDNVTANVKTIKSVPLQLRGDYPDKFEIRGEIVLPIEGFL
KMNEARIEIGEEPYRNPRNTASGSLKLQDSAEVAKRPLECLLYSLKGRHLGVDTQFESLQ
KARDWGFKVPSEARLVKSIDEVLEYINYWDEHRHELPYEIDGVVVKVNSFYQQEELGYTA
KAPRWAMAYKFKAEQVSTRLNEITYQVGRTGAITPVANLEPVELAGTTIKRASLHNADQI
AKLDVREGDEVFVEKGGEIIPKIIAVDFTKRPEHSQPTQYITQCPECDTGLVRQEGEAQH
YCPNYNGCPPQIIGRIQHYISRKAMDIEGLGGETVALLVNAGLINNYSDLYELTVEHVLP
LERMAQKSAENLVNGIEASKQIPFERVLYALGIRYVGETVAKKLAKHYKSIDALSNATQD
NLVNVDEIGEKIAESVVDFFNSEQNQLIIERLKCFGVQLELSAETLANQTNKLEGETFVV
SGVFETVSRTELKKLIEDNGGKVSSSISSKTSFVVAGDKMGPSKKAKAEKLGVSIISEID
FFGKLK
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaaacatacaacaacaaatacaacaacttcgcgacgaattacgagagcataat
tacaactattatgtgttggacaatccggttataagtgattatgatttcgatatgaaattg
aagcaacttcaggaactggaagccaaatatcctgagttttacgatgccaattccccaagt
ttgcgtgttggaggagaagtgaccaaaaactttgaaactgtggtacacgagtccagaatg
tactcgttggataattcgtattccaaagaagatctagaagattgggaaacacgtattaaa
aagttggttgatggtgacgtaatgtatacctgtgagttgaaatatgatggcgcttcaatg
aacctaacctacgaaaacggaacattggtaaaagcggtaacacgaggcgatgggtttcaa
ggtgataatgttacagccaacgtaaaaactattaaatcggtgccattacagttgcgtggt
gattatccagataaatttgaaatacgcggtgaaattgtgttgcctattgaagggtttctt
aaaatgaatgaagccagaatagaaataggcgaagaaccataccggaatccgcgaaacacg
gcttctggaagtttaaaacttcaagacagtgccgaggtagccaaacgtccgttggaatgt
ttgttgtatagtttaaaagggcgtcatttaggtgtagatacacagtttgaaagtttacaa
aaggcacgcgattggggatttaaagtaccaagtgaagcccgtttggtaaaatccattgac
gaggttctagagtatataaactattgggacgagcatcgccacgaactcccttacgaaatt
gatggcgtggttgttaaggtgaatagtttttatcaacaagaggagctaggttatacagcc
aaagcaccgcgctgggcaatggcctataaatttaaggcagagcaagtttcaacacgatta
aatgaaattacgtatcaagtaggtcgcacaggagccatcacaccagtggctaacttagag
cctgtagagttggcgggaacaaccataaaacgcgcctcgttacataatgccgatcaaatt
gctaagttagatgtaagagaaggcgatgaggtatttgttgaaaaaggcggtgagattatt
ccaaaaattattgctgtcgattttacaaaacgcccagaacattcgcaacctacacaatat
attacacagtgtccagaatgtgatacaggattagtacgtcaagaaggcgaagcgcagcat
tactgccctaattataatggatgccctccgcaaattattgggcgcatacaacattatatt
tccagaaaagcaatggatattgaaggtttaggaggcgaaacggtggccttattggttaat
gctggtcttataaataactattcagatttgtacgagttaaccgtagaacacgttttgccg
ttggaacgtatggcgcaaaaaagtgccgaaaatctggttaatggtattgaagcatcaaaa
caaattccttttgaacgcgtattgtatgctttgggaataaggtatgtaggtgaaactgtg
gccaaaaaattggcgaagcattataaatctattgatgcgctatcaaatgccacacaagac
aatcttgtaaatgttgatgaaataggcgagaagatagccgaaagtgtcgtggactttttt
aattctgaacaaaaccaattgattatagagcgcttaaaatgctttggtgtgcaattggag
ctttcagctgaaactttagccaatcaaaccaataagctagaaggtgaaacatttgtggtt
tccggtgttttcgagaccgtatcgcgtaccgagcttaaaaagttaattgaagataatggc
gggaaagtctcatcttcaatatcttccaaaacctcttttgttgtggcgggtgataaaatg
gggcctagtaagaaagctaaggccgaaaaattgggggtttctattatatcagaaatagat
tttttcggcaaattgaaataa
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