Mucisphaera calidilacus: Pan265_10530
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Entry
Pan265_10530 CDS
T07838
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mcad
Mucisphaera calidilacus
Pathway
mcad03030
DNA replication
mcad03410
Base excision repair
mcad03420
Nucleotide excision repair
mcad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pan265_10530 (ligA)
03410 Base excision repair
Pan265_10530 (ligA)
03420 Nucleotide excision repair
Pan265_10530 (ligA)
03430 Mismatch repair
Pan265_10530 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcad03032
]
Pan265_10530 (ligA)
03400 DNA repair and recombination proteins [BR:
mcad03400
]
Pan265_10530 (ligA)
Enzymes [BR:
mcad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Pan265_10530 (ligA)
DNA replication proteins [BR:
mcad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pan265_10530 (ligA)
DNA repair and recombination proteins [BR:
mcad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Pan265_10530 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pan265_10530 (ligA)
MMR (mismatch excision repair)
DNA ligase
Pan265_10530 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Pan265_10530 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Zn_ribbon_NUD
BRCT_2
Nlig-Ia
DUF1936
Motif
Other DBs
NCBI-ProteinID:
QDU71204
UniProt:
A0A518BWA3
LinkDB
All DBs
Position
1317003..1319054
Genome browser
AA seq
683 aa
AA seq
DB search
MTDVAARASELRGILEDANRRYYVDASPTLSDEAYDRLLAELQSIEEAHPELATEDSPTR
RVGGEPIEGFETVEHAVPMLSIDNTYDREELTAWYGRVLKRVGGDGEGLFGAGGVAVRAE
AKVDGVAISLRYEGGRLVRAVTRGDGRRGDDVTANVRTIRAVPMVLDAGEDILPDVLEVR
GEIFMDQAEFDRINHEKEARGEAMLVNPRNATAGTLKQLDARAVAERRLRFLAHGVGVVE
PNRFESYSVFCGALRGWGLPVNDALGDVTDSVEELWGMIERFERERIGLGFATDGVVVRV
DRFDLQERLGVRSKSPRWVIAFKFAAERKETVLRDVVWQVGKTGRITPRAEMDPVFVGGT
TVTFATLHNADQVERLGVEIGDRVVVQKAGEIIPQVMGLAEGKRETKRRKIEAPSACPSC
GEPTVREEGEVDLRCVNPACPAQLMERLIWFVGRDQMDIDGLGEKAVIQLVEAGLVKTFG
DLYRLNDRRAELLDLDRMGEKKVEGMLVGIEASKERGLARVLAGLGIRHVGGRAAAILAG
HFGDVKSLSAADVETIADVDEIGPITAASVHDFASSDAGRGILGDLASCGVDLTQEQVAV
PAGDGPFVGKRVVITGTFEAMDRKAIKQRVEAMGGRVSGSVSGNTDLLLAGERAGSKLAK
AESLGVEVWDEARLMSVLDGEGE
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgacagatgtagcggcgcgagcgtcggaactgcgtggaatcctggaggacgcaaaccgg
cgttattacgtggacgcgtcgccgacgctctcggatgaggcgtatgaccgcctgctggca
gagttgcagtcgatcgaggaggcgcatccggagctggcgacggaggactcgccgacgcgg
cgtgtgggcggggagccgatcgagggcttcgagacggtcgagcacgcggtgccgatgctg
tcgatcgacaacacctacgaccgtgaggagttgacggcgtggtacgggcgtgtgctcaag
cgtgtggggggtgatggcgaaggtctgtttggcgctgggggcgtggcggtgcgcgcggag
gcgaaggtggacggcgtggcgatcagcctgcgttacgagggagggcggctggtgcgggcg
gtgacgcgtggcgatggtcgccgaggggatgacgtcacggcgaacgtgcgcacgatccgt
gcggttccgatggtgcttgacgcgggcgaggacatcttgcccgacgtgctggaggtgcgt
ggcgagatcttcatggatcaggcggagtttgaccggattaaccatgagaaggaggcgcgt
ggcgaggcgatgctggtcaaccctcgtaacgcgacggcggggacgctcaagcaactcgac
gcgcgggcggtggcggagcggcggctgcgttttctcgcccacggtgtgggcgtggtggag
ccgaatcgttttgagtcctacagcgtgttttgcggggcgttgcgtgggtgggggctgccg
gtgaatgacgcgttgggtgatgtaacggactcggtcgaggaactgtgggggatgatcgag
cgtttcgagcgggagcggatcggcctggggttcgcgacggacggcgtggtggtgcgtgtg
gaccggtttgatctgcaggagcggctgggtgtgaggagcaagtcgcctcgttgggtgatc
gccttcaagtttgcggcggagcgtaaggagacggttctgcgtgacgtggtgtggcaggtt
ggtaagacgggacggatcacgccacgggcggagatggatccggtctttgtgggcgggacg
acggtgacgttcgcgacgcttcacaacgcggatcaggtggagcggttgggggtggagatc
ggtgaccgcgtggtggtgcagaaggctggcgagatcatccctcaggtgatgggtcttgcc
gagggcaagcgtgagacgaagcgcagaaagatcgaggcgccttcggcctgcccgagctgt
ggcgagccgacggtgcgcgaggagggcgaggtcgatctgcgttgcgtcaacccggcttgt
ccggcacagctgatggaacggctcatctggttcgtgggccgtgatcagatggacattgac
gggctgggtgaaaaggcggtcattcagttggtcgaagctggtttggtgaagacgtttggt
gatctgtaccggctgaatgatcggcgagccgagctgcttgacttggatcggatgggtgag
aagaaagtggagggcatgctggtggggatcgaagcgagtaaggagcgtgggctggcacgc
gtgctggcggggctggggatccggcacgttggcgggcgggcggccgcgattctggcgggg
catttcggtgatgtgaagtcgttgtccgcggctgacgtggagacgatcgcggatgttgat
gagatcgggccgatcacggcggcttcagtgcatgactttgcgagcagcgatgcggggcgt
gggattctgggggatttggcgtcgtgcggtgtggacctgacgcaggagcaggtagcggtt
ccggcgggagatgggccgtttgtcggcaagcgtgtcgtgatcacggggacgttcgaggcg
atggatcgcaaggcgatcaagcagcgggttgaggcgatgggcgggcgtgtgtcggggagt
gtgtcgggcaacacggatctgctgctggccggggagcgggcggggagcaagctggcgaag
gcggagtcgcttggcgtggaggtgtgggacgaggcgcggctgatgtcggttctggatggt
gagggtgagtag
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