Mytilus californianus (California mussel): 127739256
Help
Entry
127739256 CDS
T08804
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
127739256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcaf03400
]
127739256
Enzymes [BR:
mcaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
127739256
DNA repair and recombination proteins [BR:
mcaf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
127739256
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
BRCT_2
DNA_ligase_IV
RNA_ligase
LIG3_BRCT
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
127739256
NCBI-ProteinID:
XP_052106842
LinkDB
All DBs
Position
Unknown
AA seq
918 aa
AA seq
DB search
MDHQENEDVRDDGPSVASKVFFAELCGLLEKISKTQGNDKKKKIMKEFIDKWRDFHNQLH
KDDKKTNDSFYSAMRLLIPHLEKERLAYGIKEHMLAKLLIEVLCLGKDSPDANRLLNYKA
PKSAKMEAGDFASVAYYVLKNRCPEKGSLTIKEVNNCLDGIATNNAAKKKELVRKNILHL
LTNMSAIELKWLIRMIVKELKVGLSQASVLSVYHPDAEEFYNVNNNLEKVCRMLREKDVR
VHEIGISVFSPFTPMLGERGAPDQIEKIMEGKPYYIETKFDGERMVLHKDEGNYKYFTRS
GNEYTSTFGAHELDGNLTPHIHNCFKPFVKKCILDGEMIGYDPVTKTFATKAMNTDIKRQ
QQEGLQSCLHVFDIVLLNDKVLTNQPLTERLKILKTVFEPVEGRILLSEHKEARTNQDCA
DALNDAIDGREEGIMVKNPESVYRPNTRKGGWYKVKPEYVGGLMDELDVLVVGGFFGVGH
RSGMMSHFLCAVAVPPEEGEEPKIFHSFCKVGSGYSKKELSEFNNKLVDHWKIFDKKNPP
TNIILASGFKEKPDAWIEPSKSCIVQIKAAEIIDSERFKTGCTLRFPRVEKFRDDKHWRE
CMTVTDIIELKEKSGGKLAGGRVEINEEAEPAKKKRKVVSRVVRPTLADRFKGVDASSIT
KVSEMLKGKEFCVVNGSSSFSKSDAEKKIIEYGGTIVQNPGSSTFCVLAEKVALRVTNLI
KRDMYDIVKLEWFHRCIEGSTWVPWSPGDMIHTSPKTQKSFQVDYDQFGDSFTEDTTAEQ
LKNVFERVNQDDIDEVNETDIAELEQKYFPDESPYGLFRTCRFYIDKYLVIDDTTTHIKD
SSLDLLELELRFFGGITTDELDDEVSHVLVDKKDLSRVPEMKRERRNRRTKFHIVTQEWI
KECVEEGELSSERQFEPT
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccaggaaaatgaagatgtcagagatgatggtccatcagtagcatccaaagtg
ttttttgcagaactctgtggtctgctagagaaaatatcaaaaactcaaggaaatgataaa
aagaaaaaaataatgaaagaatttattgataaatggagagattttcataatcagctccat
aaagatgataagaaaacaaatgattccttttattcagcaatgagacttttgatcccacat
cttgaaaaggaaagattagcctatggcattaaagaacacatgctagccaagctgttaata
gaggttttatgtcttggaaaagacagtccagatgctaatagattacttaattacaaagct
cctaaatctgctaaaatggaagcaggtgattttgccagtgtagcctactatgttctaaag
aacagatgtcctgaaaaaggatccttaaccattaaggaagtcaataactgtcttgatgga
atagcaacaaataatgctgcgaagaagaaagaacttgtcaggaagaacatcttacatctc
ctgaccaatatgtctgctatagaacttaaatggttgataaggatgattgttaaagaactc
aaggttggattaagtcaggcatctgtcctttctgtttatcatcctgatgctgaagaattc
tacaatgtgaacaataatttagaaaaggtgtgcagaatgttgagagaaaaagatgtgagg
gtgcatgagattggaatatctgtattctctccctttacaccaatgttaggagagagggga
gcacctgatcagatagaaaagataatggaaggaaagccctactatatagagacaaagttt
gatggtgaaaggatggtgttacataaggatgaagggaactataaatattttacaagaagt
ggtaatgaatacaccagtacatttggagctcatgagttggatggtaacctcacaccacac
atacacaattgtttcaagccatttgtcaagaaatgtatcctggatggagaaatgatagga
tatgatcctgttacgaaaacatttgctacaaaagctatgaatacagatataaagagacaa
caacaggaaggtctacagtcttgtctacatgtgtttgatattgtattgttgaatgataaa
gtcctcaccaaccaacctctaacagaaagactgaagatactaaagacagtgtttgaacct
gtagaaggcagaattttactgagtgaacacaaagaggctagaacaaatcaggattgtgca
gatgcactgaatgatgctattgatggaagggaggaaggaattatggtgaagaatcccgaa
tctgtttatcgtccaaatacaaggaaaggaggatggtataaagttaaaccagaatatgta
ggcggtttgatggatgaattggatgtattagtagttggtggattttttggtgttggacat
agatcagggatgatgtcacattttctgtgtgctgtagctgtaccacccgaagaaggagaa
gaaccaaaaatatttcattcattttgtaaggttgggtctggctacagcaagaaagagctg
tcagaatttaacaataagctagttgaccattggaaaatatttgataaaaagaatcctcca
actaatataattttggcttctggatttaaagaaaagcctgatgcatggatagaaccttct
aagtcttgtatagttcagataaaggcagcagaaattattgacagtgaaagatttaagaca
ggttgtaccttaagatttccacgagttgagaagttccgagacgataaacactggcgtgaa
tgtatgacagtcactgatatcatagaattgaaagagaaatctggaggcaaattagctggt
ggacgtgtagaaattaatgaagaagctgaaccagccaagaaaaaacgtaaggttgtaagc
agggtagtacgtcccacattagctgatcgatttaaaggtgttgatgcatcgtctatcaca
aaggtgtcagaaatgttaaaaggtaaagaattctgtgttgtgaatggatcttcatctttt
tctaaatctgacgcagaaaagaagatcatagaatatggtggtactattgttcaaaatcca
ggttcatccacattttgtgttttagcagaaaaggttgctttaagagtaaccaatctaatt
aaacgtgatatgtatgacattgtaaagcttgaatggtttcacagatgtattgaaggtagc
acatgggttccatggtcaccaggagatatgattcacacgtcaccaaaaacacaaaagtcc
ttccaagtagattatgatcagtttggagacagttttacagaggatactacagcagaacaa
ctcaagaatgtatttgaaagagtgaaccaggatgatatagatgaagtcaatgaaactgat
attgcagaactagaacagaaatattttcctgatgagtctccatatggactgttcagaact
tgcagattttatattgataaatatttggtgattgatgataccacaactcacattaaggat
tccagtttagatcttttagaattagaactacgtttctttggagggataacaacagatgaa
ctagatgatgaagtgtcacatgtgttggtagataagaaagatttgtcaagagtaccagag
atgaaaagagaaaggcgcaatagaagaacaaaatttcatattgtaacacaagaatggata
aaagaatgtgtggaggaaggagaattatcttcagagagacaatttgaaccaacttaa
DBGET
integrated database retrieval system
