Mus caroli (Ryukyu mouse): 110284330
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Entry
110284330 CDS
T05910
Symbol
Msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal01524
Platinum drug resistance
mcal03430
Mismatch repair
mcal05200
Pathways in cancer
mcal05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
110284330 (Msh6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
110284330 (Msh6)
09162 Cancer: specific types
05210 Colorectal cancer
110284330 (Msh6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
110284330 (Msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcal03400
]
110284330 (Msh6)
DNA repair and recombination proteins [BR:
mcal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
110284330 (Msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
HVO_0758
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
110284330
NCBI-ProteinID:
XP_021005711
Ensembl:
MGP_CAROLIEiJ_G0021951
UniProt:
A0A6P5NUX5
LinkDB
All DBs
Position
17:83550904..83568665
Genome browser
AA seq
1360 aa
AA seq
DB search
MSRQSTLYSFFPKSPALGDTKKAAAEASRQGAAASGASASRGGDAAWSEAEPGSRSAAVS
APSPEAKDLNGGLRRASSSAQAVPPSSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFI
RKKGKSVRVHVQFFDDSPTRGWVSKRMLKPYTGSKAKEAQKGGHFYSSKSEILRAMQRAD
EALSKDTAERLQLAVCDEPSEPEEEEEETEVREAYLSDKSEEDNYNGSEEEEAQPSVQGP
RRSSRQVKKRRVISDSESDVGGSDVEFKPDTRQEGSSDDASSGVGDSDSEDLGTFGKGAP
KRKRAMVAQGGLRRKSLKKETGSAKRATRILSETKSTLSAFSAPQNSESQTHVSGGGNDS
SGPTIWYHETLEWLKPEKRRDEHRRRPDHPEFNPTTLYVPEDFLNSCTPGMRKWWQFKSQ
NFDLVIFYKVGKFYELYHMDAVIGVSELGLIFMKGNWAHSGFPEIAFGRFSDSLVQKGYK
VARVEQTETPEMMEARCRKMAHVSKFDRVVRREICRIITKGTQTYSVLDGDPSENYSRYL
LSLKEKEEETSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHHPPVQILFEKG
NLSTETKTVLKSSLSSCLQEGLIPGSQFWDATKTLRTLLEGGYFTGDGGSSTVLPLVLKG
MTSESDSVGLTPGEESELALSALGGIVFYLKKCLIDQELLSMANFEEYFPLDSDTVSTVK
PGAVFTKASQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAP
LCSPSAISDRLDAVEDLMAVPDKVTEVADLLKKLPDLERLLSKIHNVGSPLKSQNHPDSR
AIMYEETTYSKKKIIDFLSALEGFKVMCKVSGLLEEVAGGFTSKTLKQVVTLQTKSPKGR
FPDLTAELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLDKQRSR
IGCKSIVYWGIGRNRYQLEIPENFATRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINA
EERRDTSLKDCMRRLFYNFDKNYKDWQAAVECIAVLDVLLCLANYSQGGDGPMCRPEVLL
PGEDTHPFLEFKGSRHPCITKTFFGDDFIPNDILIGCEEEAEERGKAYCVLVTGPNMGGK
STLIRQAGLLAVMAQLGCYVPAEKCRLTPVDRVFTRLGASDRIMAGESTFFVELSETASI
LRHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSKSV
CVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHKKA
REFERMNQSLQLFREVCLATEKPTINGEAIHRLLALINGL
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgacaaagcaccctgtacagcttcttccccaagtccccggcactcggcgacacc
aagaaggccgcggccgaggcctcacgccaaggtgccgctgcctctggagcctccgcttcc
cgcggcggggatgcggcctggagcgaggctgaaccggggtcccggtccgcggcggtatcc
gccccgtcgccggaggcaaaggatctcaacggagggctgcggagggcctcctcctccgcg
caggccgtgcctcccagttcttgtgacttttcaccaggcgacttggtttgggctaagatg
gaaggttacccctggtggccttgcctagtttataatcatccctttgatggaacgttcatc
cggaagaaagggaaatctgtccgtgttcacgtacagttctttgacgacagcccaacaagg
ggctgggttagcaaaaggatgttaaagccatatacaggttcaaaggcaaaggaagcccaa
aagggaggtcatttctacagttcaaagtctgagatactcagagcaatgcaacgtgcagac
gaggccttaagtaaagacacggctgagaggctgcagctggcagtgtgtgatgagccttca
gagccggaggaggaggaggaggagacagaggtgcgtgaggcttatttatctgataagagt
gaagaggataattacaacgggagtgaagaagaagaagcacagcccagtgttcaggggcct
aggcgaagcagccggcaagtcaagaagcgacgggtcatctcagactcggagagtgacgtt
ggtggctctgatgtagaattcaagccagacactaggcaggaaggaagcagtgatgacgca
agcagtggagttggggacagcgatagtgaggacctgggcaccttcggcaaaggcgctcca
aagcggaagagagccatggttgctcagggtggacttagaaggaaaagtctgaagaaggaa
acaggctcagccaaacgagcaactcgcattctgtcagaaaccaagagtaccttgagtgct
ttttctgcccctcaaaattctgaatcccagacccacgtcagtggaggaggtaacgacagt
agtggacccactatttggtatcacgaaactttagaatggcttaagccagaaaaaagaaga
gatgagcacaggagacgccccgatcaccctgaatttaatcccaccacactgtatgtgcct
gaagacttcctcaattcttgtactccagggatgaggaagtggtggcagttcaagtctcag
aactttgatcttgtcatcttttataaggtggggaagttttatgaattgtatcacatggat
gctgttattggagtcagtgagctggggctgatattcatgaagggcaactgggcccattct
ggttttccagagattgcatttggccgattctcggattccttggtgcagaagggctataag
gtagcacgggtggaacagaccgagactccagaaatgatggaggcacgatgccggaagatg
gctcacgtgtccaagtttgatagagtggtgagacgggagatttgcaggatcattactaag
ggcacgcagacctacagtgtgctggatggcgatccctctgagaactacagtaggtatctt
cttagcctcaaggagaaggaggaagagacttctggtcacactcgtgtgtatggtgtttgc
tttgtggacacgtcactgggcaagtttttcataggccagttttcggatgaccgccactgt
tccagatttaggactctagtggcacaccatcctccagtacaaattttgtttgagaaagga
aatctctcaacagagaccaaaactgtcctaaagagttcactgtcatcttgtcttcaggaa
ggtctcataccaggttcccaattttgggatgccactaagactttgcgaacactccttgaa
ggagggtacttcactggagatggaggcagtagtacagtgctgcctctggtccttaaagga
atgacctcggagtcagattctgtagggttgaccccaggcgaggagagtgaattggcgctc
tctgctctaggcggtattgttttctacctcaaaaaatgcctgattgatcaggagcttctg
tcaatggctaattttgaagagtatttccctttggattctgacacagtcagcacagtaaaa
cctggtgctgtctttactaaagccagtcagcgaatggtgctagacgcagtgacgttaaac
aacctggagattttcctgaatgggacaaatggctctactgaagggaccctgctagagaga
ctggatacttgccataccccctttggcaagcggctcttaaaacagtggctttgtgccccc
ctctgcagcccttctgccatcagtgaccgtttagatgctgtggaagatctgatggccgtg
cctgacaaggtcactgaagttgcagacctcttaaagaagctgccagatcttgagcggctg
ctgagtaagattcacaatgttgggtctcccctaaagagccagaaccatccagacagcagg
gctataatgtacgaggaaacgacatacagcaaaaagaagatcattgattttctctctgct
ctagaaggattcaaagtaatgtgtaaagtctcggggcttctggaggaggttgcgggtggt
tttacgtctaaaaccctcaagcaggttgttactctacagacaaaaagtcctaaaggccgc
tttcctgatctgactgcagaactgaaccgatgggacacagcctttgaccatgagaaagct
cgaaagacagggctcattactccaaaagcagggtttgactccgattatgaccaagcactt
gctgatataagagagaatgaacagagcctcctggagtacttagacaaacagcgtagtcgg
atcggctgtaagagcatagtctactggggaatcggtaggaaccgttaccagttagagatt
ccagagaattttgctacccgtaatctacctgaagaatatgagttgaaatctactaaaaaa
ggctgtaaacgatactggaccaaaacaattgagaagaaattagctaatcttataaatgct
gaagagcgcagggacacatctttaaaggactgcatgcggcgcctgttctataacttcgat
aaaaactacaaggactggcaggctgctgtagagtgcattgcagtgttggatgtcttactg
tgcctggctaactacagtcaaggaggagatggtcctatgtgtcgcccagaagttctgtta
cccggagaagacacacatcccttcttagagtttaaagggtcacgacatccctgcattaca
aagacgttttttggagacgattttattcctaacgacattctaataggctgcgaggaagaa
gcagaagaacgtggcaaagcctattgtgtgcttgtgactggaccaaatatggggggcaaa
tctacactcataagacaggctggtctgttggctgtaatggcccagctgggttgttacgta
cctgctgagaagtgcaggctcacaccagttgacagagtgttcactaggcttggtgcctca
gacagaatcatggcaggggaaagtacattttttgttgagttgagcgaaactgctagcata
cttaggcatgcaacagcacattctttggtacttgtggatgaattaggaagaggcaccgca
acttttgatgggacagcgatagccaatgctgttgttaaagaacttgctgaaaccataaag
tgtcgaacactgttttctacacactatcattcattagtagaagattactctaaaagtgtg
tgtgtacgcctaggacatatggcatgcatggtagaaaatgaatgtgaggaccccagccag
gagactattactttcctctataaattcatcaagggagcttgtcctaagagctacggcttt
aatgcagcacggcttgcgaatcttccggaggaggttattcagaagggacacaaaaaagca
agagaatttgagaggatgaatcagtcattacaactgtttcgggaagtttgtctggctact
gaaaagccgactataaacggtgaagctatccataggttgctggccttgattaacggattg
tag
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