Mus caroli (Ryukyu mouse): 110285291
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Entry
110285291 CDS
T05910
Symbol
Nfkb2
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit isoform X1
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04010
MAPK signaling pathway
mcal04064
NF-kappa B signaling pathway
mcal04380
Osteoclast differentiation
mcal04625
C-type lectin receptor signaling pathway
mcal05134
Legionellosis
mcal05166
Human T-cell leukemia virus 1 infection
mcal05169
Epstein-Barr virus infection
mcal05200
Pathways in cancer
mcal05203
Viral carcinogenesis
mcal05224
Breast cancer
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
110285291 (Nfkb2)
04064 NF-kappa B signaling pathway
110285291 (Nfkb2)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
110285291 (Nfkb2)
09158 Development and regeneration
04380 Osteoclast differentiation
110285291 (Nfkb2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
110285291 (Nfkb2)
05203 Viral carcinogenesis
110285291 (Nfkb2)
09162 Cancer: specific types
05224 Breast cancer
110285291 (Nfkb2)
09172 Infectious disease: viral
05166 Human T-cell leukemia virus 1 infection
110285291 (Nfkb2)
05169 Epstein-Barr virus infection
110285291 (Nfkb2)
09171 Infectious disease: bacterial
05134 Legionellosis
110285291 (Nfkb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcal03000
]
110285291 (Nfkb2)
Transcription factors [BR:
mcal03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
110285291 (Nfkb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_3
Ank_5
Ank_4
Death
Motif
Other DBs
NCBI-GeneID:
110285291
NCBI-ProteinID:
XP_021007008
Ensembl:
MGP_CAROLIEiJ_G0023031
UniProt:
A0A6P5P3M8
LinkDB
All DBs
Position
19:42960117..42967470
Genome browser
AA seq
900 aa
AA seq
DB search
MDNCYDPGLDGIPEYDDFEFSPSIVEPKDPAPETANGPYLVIVEQPKQRGFRFRYGCEGP
SHGGLPGASSEKGRKTYPTVKICNYEGPAKIEVDLVTHSDPPRAHAHSLVGKQCSELGVC
AVSVGPKDMTAQFNNLGVLHVTKKNMMEIMIQKLQRQRLRSKPQGLTEAERRELEQEAKE
LKKVMDLSIVRLRFSAFLRASDGSFSLPLKPVISQPIHDSKSPGASNLKISRMDKTAGSV
RGGDEVYLLCDKVQKDDIEVRFYEDDENGWQAFGDFSPTDVHKQYAIVFRTPPYHKMKIE
RPVTVFLQLKRKRGGDVSDSKQFTYYPLVEDKEEVQRKRRKALPTFSQPFGGGSHMGGGS
GGSAGGYGGAGGGGSLGFFSSSLAYNPYQSGAAPMGCYPGGGGGAQMAGSRRDTDAGEGA
EEPRTPPEAPQGEPQALDTLQRAREYNARLFGLAQRSARALLDYGVTADARALLAGQRHL
LMAQDENGDTPLHLAIIHGQTGVIEQIAHVIYHAQYLGVINLTNHLHQTPLHLAVITGQT
RVVSFLLQVGADPTLLDRHGDSALHLALRAGAAAPELLQALLCSGAHAVPQILHMPDFEG
LYPVHLAVHARSPECLDLLVDCGAEVEAAERQGGRTALHLATEMEELGLVTHLVTKLHAN
VNARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAENEEPLCPLPSPSTSGSDSDSEGP
ERDTQRIFRGHTPLDLTCSTKVKTLLLNAAQNTTEPPLAPPSPAGPGLSLGDAALQNLEQ
LLDGPEAQGSWAELAERLGLRSLVDTYRKTPSPSGSLLRSYKLAGGDLVGLLEALSDMGL
HEGVRLLKGPETRDKLPSTAEVKEDSAYGSQSVEQEAEKLCPPPEPPGGLCHGHPQPQVH
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atggacaattgctacgatccaggtctggatggcatccccgaatatgatgattttgaattc
agcccctccatcgtggagcctaaggatccagcccccgagacagctaatggcccgtatctg
gtgattgtggaacagcccaaacagcgaggcttcagatttcgatatggctgtgaaggcccc
tcccatggaggtttgccaggtgcctccagtgagaagggccggaagacctatcctactgtc
aagatctgtaactatgagggaccggccaagattgaggtggacctggtgacacacagtgac
ccaccacgtgcgcatgcccacagtctggtgggcaagcagtgttcagaactgggggtgtgt
gctgtgtctgtaggacccaaggacatgactgctcaatttaataatctgggtgtcctgcat
gtaaccaagaagaacatgatggagattatgatccagaaacttcagaggcagcgtctccgc
tccaagcctcagggccttacagaggccgagcggcgagagctagagcaggaggccaaggag
ctgaagaaagtcatggacctgagcattgtacggctgcgcttctcagctttccttcgagct
agtgatggctccttctccttgcccctgaagcctgtgatctcccagcccatccatgacagc
aagtctccaggggcctcaaacctgaagatctcccgaatggacaagacagcgggttccgtg
cgtggtggagacgaagtttatttgctctgtgataaggtgcaaaaagacgacattgaggtt
cggttctacgaggatgatgagaacggatggcaagcctttggggacttctctcccacagac
gttcataaacagtatgccattgtgttccggacaccgccctatcacaagatgaagatcgag
aggcctgtaacggtgttcctgcagctgaaacgcaagcgtgggggcgatgtctctgactcc
aaacagttcacatattaccctctggtggaagacaaggaggaagtgcagaggaagcggaga
aaggccttgcccaccttctcccagcccttcgggggcggatcccacatgggtggaggttct
ggaggctccgctgggggttatggaggcgctggaggaggtggcagcctcggctttttctcc
tcctccttggcctacaacccctaccaatccggtgcagccccaatgggctgctacccgggt
gggggaggtggagcgcagatggccggctctagacgggacactgatgctggcgagggtgca
gaggagcccaggacgcccccggaggctccccagggcgaaccgcaggcccttgacacactg
cagcgagctcgcgagtacaacgcgcgcctgttcggtctggcgcagcgcagcgcccgagcg
ttgctggactacggcgtcaccgcagacgcgcgtgctttgctagcgggacagcgccacctg
ctgatggcacaggacgagaacggagacacgccgctgcacctggccatcatccatgggcag
actggtgtcattgagcagatagcccatgtcatttatcatgctcagtacctcggcgtcatc
aacctcaccaaccacctgcaccagacacctctgcacctggcggtgatcactgggcagaca
agggtggtgagcttcctactgcaggtgggtgcagaccccacgctgctggatcggcacgga
gactccgccctccacttggctctccgggcaggtgctgcagccccggagctgttgcaggca
ctgttgtgcagcggagcccatgctgtgccccaaatattgcacatgcctgattttgaggga
ctataccctgtacacctggcagtccatgcccgaagccctgagtgcctggatctgttagtt
gactgtggagctgaagtggaggcagcagagaggcaggggggccgaactgccctgcatcta
gccacagagatggaggagttggggctggtcacccatctggtcaccaagctccatgctaat
gtgaatgcccggacctttgctggaaacacacccctccacctggcagccggactcgggtcc
ccaactctcactcgcctccttctaaaggctggtgctgacatccatgcagagaacgaggag
cctctgtgcccgctgccctcaccctctacctccgggagcgactccgactctgaagggcct
gagagggatacccaaagaatcttccgaggccataccccccttgacctcacttgcagtacc
aaggtgaagactctgctgctaaatgctgctcagaacaccacggagccacccctggcccca
cccagccctgcagggccagggctgtcactgggggatgcagccctgcagaacctggagcaa
ctactggatggtcccgaagcccagggcagctgggcagagctggcagagcgactggggttg
agaagcctggtggacacatacaggaagaccccgtctcccagcggcagtctccttcgtagt
tacaagctggctggtggggacttggtgggtctattggaggccttgtctgacatgggtctc
catgagggagtcaggctgctgaaaggtcctgagacccgcgacaagctgcccagcacagca
gaggtgaaagaagacagtgcctatgggagccagtcagtggagcaggaggcagagaagctg
tgtcctccccctgagcctccaggagggctctgccacgggcacccccagcctcaggtgcac
tga
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