Mus caroli (Ryukyu mouse): 110285359
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Entry
110285359 CDS
T05910
Symbol
Atg2a
Name
(RefSeq) autophagy-related protein 2 homolog A isoform X1
KO
K17906
autophagy-related protein 2
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04136
Autophagy - other
mcal04140
Autophagy - animal
mcal05010
Alzheimer disease
mcal05014
Amyotrophic lateral sclerosis
mcal05016
Huntington disease
mcal05017
Spinocerebellar ataxia
mcal05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110285359 (Atg2a)
04136 Autophagy - other
110285359 (Atg2a)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
110285359 (Atg2a)
05014 Amyotrophic lateral sclerosis
110285359 (Atg2a)
05016 Huntington disease
110285359 (Atg2a)
05017 Spinocerebellar ataxia
110285359 (Atg2a)
05022 Pathways of neurodegeneration - multiple diseases
110285359 (Atg2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mcal04131
]
110285359 (Atg2a)
03029 Mitochondrial biogenesis [BR:
mcal03029
]
110285359 (Atg2a)
Membrane trafficking [BR:
mcal04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
110285359 (Atg2a)
Mitochondrial biogenesis [BR:
mcal03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
110285359 (Atg2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG2_CAD
VPS13_N
Motif
Other DBs
NCBI-GeneID:
110285359
NCBI-ProteinID:
XP_021007107
Ensembl:
MGP_CAROLIEiJ_G0022602
UniProt:
A0A6P5P0P3
LinkDB
All DBs
Position
19:3027548..3048008
Genome browser
AA seq
1916 aa
AA seq
DB search
MSRWLWPWSNCVKERVCRYLLQHYLGHFFQEHLSLDQLSLDLYKGSVALRDIHLETWSVN
EFLRSMESPLELVEGFVSSIEVAVPWAALLTDHCTVCVSGLQLTLQPRQGSGPGAADSQS
WASCMTTSLQLAQECLREGLPEPSEPPQPLEGLEMFAQTIETVLRRIKVTFLNTVVRVEH
SLGDEERSVAVEVRVQRLEYCDEAVRDPSQAPPVDVHQPPAFLHKLLQLSGVCLYFEELP
SQADPPQPPLQIGSCTGYVELMVRLKQNEAFPGPKLEVSGQLGSLHLLLTPRQLQQLQRL
LSAINLADPAGLADKLNKSRPLGAEDLWLIEQDLNQQLQAGAVAESLSLYPITNPLNLDS
ADLFFSMAGLTSSVTSAVSELSVYSVDLGSSVHSNMAFHRPSTPPHSGGKMAPTPLLDST
RPDSRVKMTLGGVSLTLLQTASPSSGPPDLPTHFFAEFDAAKDGPFGSRDFSHLRPRFQR
ACPCSHVRLTGTAVQLSWELRTGGHSRRISSTEVHFGQLEVLECLWPRAATEPEYTEILS
FPSHSGSEASARPCAHLRHTQTIRRVLKSRSRRSTACHCHSELSLDLADFQSDVELGSLD
RLAALLRQVTTPSEPPAGLLTEPPQATEQQTVFRLSAPRATLRLRFPIPDLRPDRDPWAG
QAVRAEQLRLELSEPQFRSELNSGPGPPAPTRLELTCSDLQGIYEDGEKPPVPCLRVSKA
LDPRSTEAKYFLPQVVVTLNPQSSGTQWETAYEKGRDLELSTESPCELQQPEPSPFSSKR
TMYETEEMVIPGDPEEMRTFQSRTLALSRCTLDVIMPSAHIFLPSKEVYESIYNRINNDL
LMWEPADLLPTSNAAAQPSGSSGFKMCKSAFKLDSDSDEEDTQFFSMASGVPQTPASEPS
PRQSQSTFSTLVTVLKGRITALCEAKDETGKRLEVTHGELVLDVEQGTIFSVAQYRGQPG
LGYFCLEAEKAKLYHRAAIEDYLLPTHLEVPSFAPPAQLAPTIYPSEEGVTERGPLGRKG
QGPPMLSAAVRIHLDPHKNVKEFLVTVRLHKATLRHYMAPPEQSWHSQLLDFLDVLDDPV
LGYLPPTVITVLHTHLFSCAVDYRPLYLPVRVLVTAETFTLSSNIVMDTSTFLLRFILDD
SALYLSDKCEVESLDLRRDYVCVLDIDLLELVIKTWKGSTEGRLSQPLFELRCSNNVVHV
HSCADSCALLVNLLQYLTSSGDLHPPPRPPSPTEIAGQKVQLSESPASLPSCLPVETALI
NQRDLTDALLDTERRGLRELAQSSGGPLPQASPVSVYLFPGERSGAQAPLPPPGASSHTL
GSKAKEHENEEEGDGDTLDSDEFCILDAPGLGIAPRDGEPIVTQLHPGPIIVHDGHFSQP
LGSTDLLRAPAHFPVPSSRVVLREVSFIWHLYGGRDFGLHPTYRARVGLTGPRVSPSRSS
GPNRPQNSWRTQGGIGRQHQVLMEIQLSKVSFQHEVYPEESAIAGGLGQELDERPLSRQV
LIVQELEIRDRLATSKINKFLHLHTSERLPRRTHSNMLTIKALHVAPTSSVGGPECCLRV
SMMPLRLNVDQDALFFLKDFFTSLAASINPMVPGDTSEAPRETHSRPGSPQEGQSEDTDT
ASSPPEASGSGHSSSDQQPIYFREFRFTSEVPICLDYHGKHVTVDQVGTFMGLLIGLAQL
NCSELKLKRLCCRHGLLGVDKVLCYALNEWLQDIRKNQLPGLLGGVGPMHSVVQLFQGFR
DLLWLPIEQYRKDGRLIRGLQRGAASFGSSTASAALELSNRLVQAIQATAETVYDILSPA
SPVSRSLQDKRSSRKLRRGQQPADLREGMAKAYDAVREGILDTAQTICDVASRGHEQKGL
TGAVGGVIRQLPPTVVKPIIVATEATSNVLGGMRNQILPDAHKDHALKWRLEEAQD
NT seq
5751 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgatggctgtggccatggtcgaactgtgtgaaagagcgtgtctgccgctacttg
ctacagcactacttgggtcacttctttcaggagcacctcagcctggaccagctcagcctg
gatctgtacaagggcagcgttgctctgcgggatattcacctggaaacctggtctgtgaac
gagtttttgaggtcaatggagtcaccactggaactggtggaaggctttgtgagctccatc
gaggtggctgtcccctgggctgcacttctcactgaccactgcactgtgtgtgtgtcaggc
cttcagcttaccctgcagccccgccagggttcaggaccaggggctgcggactctcagagt
tgggcctcatgcatgaccacaagcctgcagctggctcaagagtgccttcgggaagggttg
ccagaaccctcagaaccaccacagcccctggaggggctggaaatgtttgcacagaccatt
gagaccgtgctccggaggatcaaggtgaccttcctgaacactgttgtgagggtggagcat
tctctgggtgatgaggagcgaagtgtggctgtggaggtccgagtgcagagactggagtac
tgtgacgaagcagtgcgggaccccagccaggccccacctgtggatgtgcaccagccgcct
gccttcctgcacaagctgctgcagctgagtggggtctgcctatactttgaggagctgccc
tcccaggcagacccgccacagccacctctgcagatcggcagctgcacggggtacgtggag
cttatggtgaggctgaagcagaacgaggccttcccaggccccaagttggaggtatcagga
caactgggatccctgcacctgcttttgaccccgcgtcagctccagcagctccagaggctg
ctcagtgccatcaacctcgcagaccctgcaggcctggccgacaagctgaacaagagccgc
ccactgggtgctgaggacttgtggctcattgagcaagatctgaaccagcagctgcaggcg
ggtgctgtggctgagtccctcagcctgtaccccatcaccaaccccctcaatttggacagc
gcggacctcttcttctccatggccggcctcacaagcagcgtgacatcggctgtctctgag
ctctccgtgtacagcgtggacctgggctcctctgttcacagcaacatggccttccaccga
ccctcaaccccaccccactcgggtggcaagatggccccaactccccttctggacagcacg
cgccctgactcacgggtgaagatgaccttgggcggtgtgagcttgaccttgcttcagaca
gcttccccatcttcaggaccacctgacctccccacccacttttttgctgagtttgatgct
gccaaagatgggccattcggctccagggacttctcccacctccggccgcgcttccagagg
gcctgcccttgtagccacgtccggttaacgggcacagccgtgcagctgtcctgggagctg
cgcacgggcggccacagccggcggataagcagcaccgaagtgcactttggacagctggag
gtgctggagtgcctatggcccagggctgccacagagccagagtacacggagatcctgagc
ttccccagtcattctggctccgaagcctcagcccgaccctgcgcccatctgcgccacaca
cagaccattcgccgggtgctcaagagccggtcccggcgctccactgcctgccattgtcac
tcagaactgtccctggacctggccgacttccaatctgatgtggagctggggtccctggac
cgccttgctgccttgctccgtcaagtcaccacaccctctgagccacctgctggcctacta
acagagcccccacaggccactgagcagcagacagtgtttcgtctctcagcaccccgggcc
accctgaggctacgcttccccatcccagacctgcggcctgaccgggacccctgggctggc
caggctgtgcgggctgagcagctgcgactggagctgagtgagccccagttccgctcagaa
ctcaacagtgggcctggccccccagctcctacccgcctggaacttacttgctcagacctg
caaggaatctacgaagatggagagaagccaccagtcccctgcctgcgggtctccaaagct
ctggatcccaggagcactgaggccaagtactttctacctcaggtagtggtgaccctgaac
ccccagtccagtggcacacagtgggagacagcctatgagaaaggccgggatctagagctg
tccaccgagagtccgtgtgaactacagcagcctgagccctcgcccttctcctccaagcgg
accatgtacgagactgaggaaatggtgatccctggagaccctgaagagatgaggacattc
cagagccggacactggcgctgtcccgctgtactctggatgtgatcatgcccagtgcccac
atcttcctgcccagcaaggaggtctacgaaagtatctacaacaggatcaataacgacctg
ctcatgtgggagcctgcagacctgcttcccacatccaacgctgctgctcagccatctggc
tcttcagggttcaagatgtgcaagtcagccttcaagctagactcggattcggatgaagaa
gacacccagttcttctcgatggcatcaggtgtcccccagactcctgcctcagaaccttcc
cctcgccagtcccagagtaccttctccacactggtgacagtgctgaagggtcggatcact
gcgctctgtgaggctaaggatgagacggggaagcggctggaggtcactcacggggagctg
gtcctagatgtggagcaaggcaccatcttcagcgtagcccagtaccgtggccaaccaggg
cttggctacttctgcctggaagctgaaaaggcgaaactctaccatcgagcggccattgaa
gactacctgctacccactcatttggaagtgcccagctttgctccccccgctcagctggct
ccaaccatctacccatcagaggaaggggtgactgagcgaggacccttgggccgcaagggc
cagggtccccccatgctgtctgcagctgtccgtatccacctggaccctcacaagaatgtc
aaggaatttttggtgacagtacggctgcacaaagccactctacgccactacatggcccca
cctgaacagagctggcactcccagctcctggacttcttggatgtgctggacgaccctgtg
ctgggctacctgcccccgaccgtcatcactgtcctgcacacacatctcttctcctgcgct
gtggactacaggcccctctacctccctgtgcgtgtcctggtcactgctgagaccttcacc
ctctccagcaacattgtcatggacacgtctaccttcctgctcaggttcatccttgatgac
tccgctctgtacctgtctgacaagtgtgaggtggagagcctggatctgcggcgagattat
gtctgtgtcctggacattgacctcctggaacttgtcatcaaaacctggaagggcagcact
gagggcagactgagccagcctctgtttgagctgcgctgctccaacaacgtggtacacgtg
cacagctgtgctgactcctgcgccctgctggtcaacctgctccagtacctaaccagctcg
ggtgacctgcaccccccaccccggccccccagccctacagagatcgctggccagaaggta
cagctttcggagagccctgcctccctgccctcatgcctacctgtggagacagccctcatc
aaccaacgagacctgactgatgcccttctcgacactgaacggcgcggcctgagggagctg
gcccagtcatcgggtggcccactccctcaggcctctcccgtctccgtctatctgttcccc
ggtgaacggagtggggcccaggcccctttgcctcctcctggggcctcttctcataccttg
ggttctaaggcaaaggaacatgaaaacgaagaggaaggggatggagacaccctggacagt
gatgagttctgtatccttgacgcccctggcctaggcattgcgccccgagacggggagccc
atcgtgacacagctacatccaggccccatcatcgtgcacgacggtcacttctcccagccc
ctgggaagcactgacctgctgcgtgcgcctgcccacttcccagtgcccagcagccgtgtg
gtactacgggaggtctccttcatctggcacctctatgggggtagagactttggccttcac
cccacttacagagcaagagtaggcctcacaggccccagggtctcgccttcccgctcctct
ggtcccaaccgtccccagaactcctggcgtacccagggtggcattggacggcaacaccag
gtcctcatggagatccagctcagcaaagtgagcttccagcatgaagtgtacccagaagag
tcggccatagctgggggcctgggccaggagctggacgagcgaccactgtcccgccaggtg
ctcattgttcaagagctagagatccgagaccggctggccacctccaagatcaacaagttc
cttcatttgcacacgagtgagcggctgccacggcgcacacactccaacatgcttaccatc
aaggcactgcatgtggctcccaccagcagcgtcggagggccggagtgctgtcttcgagtc
tccatgatgcctctgaggctcaatgtggaccaggatgccctcttcttcctcaaggacttt
ttcaccagcctagcagccagcatcaaccccatggtcccaggggacacttctgaggctccc
cgagagacccacagccggcctggcagcccccaggaagggcagtctgaggacacagataca
gccagcagcccaccggaagcttcaggcagtggccacagctcctctgaccagcagcccatc
tatttcagggagttccgcttcacatctgaggtgcccatctgcctggattaccatggcaag
catgtcactgtggaccaggtgggcactttcatgggactcctaatcggcctggcccagctc
aactgctcagagctgaagctcaagaggctctgctgccggcatgggctcctgggtgtggac
aaggtgctgtgctatgccctcaatgaatggctgcaggacattcgtaagaaccagctgcct
ggcctgctgggaggcgtgggccccatgcactcggttgtgcagctcttccaagggttccgg
gacctgctgtggctacccatcgagcagtacaggaaagatgggcgcctcattcgggggctg
cagcgtggggctgcctcctttgggtcatccacagcctctgctgctctggaactaagcaac
aggctggtccaagccatccaggctacagctgagacagtgtatgacatcctgtccccggct
tctcccgtctcccgatccctacaagacaagcgctcttcacggaagctacgcagaggtcaa
caacctgctgacctccgggaaggcatggctaaggcttatgatgctgttcgagagggtatc
ctggatacagctcaaaccatctgtgatgtggcatccaggggccatgagcagaagggactg
acaggtgccgtggggggtgtgatccgacagctccccccaaccgtggtaaaaccaataatt
gtagcaacagaggcaacatccaacgtgctagggggcatgcgtaaccagatccttccagat
gcgcacaaggaccatgctctcaagtggcgattggaggaggcccaggactga
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integrated database retrieval system
