Mus caroli (Ryukyu mouse): 110285374
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Entry
110285374 CDS
T05910
Symbol
Pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mcal03009
]
110285374 (Pdcd11)
Ribosome biogenesis [BR:
mcal03009
]
Eukaryotic type
90S particles
Other 90S particles
110285374 (Pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
OB_RRP5_4th
HAT_Syf1_CNRKL1_C
OB_RRP5
Spt6_S1
Suf
TPR_14
TPR_19
ARM_TT21
TPR_6
UTP6_C
DUF2110
TPR_15
DUF7017
ARM_TT21_5th
ARM_TT21_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
110285374
NCBI-ProteinID:
XP_021007134
Ensembl:
MGP_CAROLIEiJ_G0023050
UniProt:
A0A6P5P408
LinkDB
All DBs
Position
19:43768675..43810181
Genome browser
AA seq
1855 aa
AA seq
DB search
MANLEESFPRGGTRKPHKPEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPATTKKLKIE
KRKSIKSMKEKFEILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEVCDAYT
QKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSNLDVTESGKKSVKLSVNPKRVNKVLS
AEALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLQKAQEYIRQKNKGAKFKVGQYLT
CVVEEVKSNGGVVSLSVEHSEVSSAFATEEQRWNLNNLLPGLLVKAQVQKVTQFGLQLNF
LTFFTGLVDFMHLEPKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRIS
YQQLGAVLDDVPVQGFFKNAGVIFRLKDGVLAYARVSHLSDSKKAFNAEAFKPGSTHKCR
IIDYSQMDELALLSLRKSIIAAPFLRYHDIKTGTVVKGTVLAIKPFGILVKVGEQIKGLV
PSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLPLLTCYEGAK
PGLRTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPEKVFYTGQVVKVAVLSCE
PSKERMLLSFRLLSDSGPKDPSVESSQKKTGAVNIGQLVDVKVLEKTKTGLEVAILPHNT
PAFLPTPHLSDHTANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDP
KSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVV
AKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTL
ADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASKYHRAGQEVEPGQKKKVVVLHVD
MLKLEVHVSLHQDLVNRKPRKLRKSSRHQGIVQHLEESFAVASLVETGHLVAFSLISHLN
DTFHFDSEKLRVGQGVCLTLKTTEPGVTGLILAVEGPASKRTRMPVRRDSETVDDKGEEK
EEEEEEKEEEDLTVKAKKRHSLAIGDKVTGTIKAVKGTHVVVTLADGFVGCIHASRILDD
IPVGTSPTTTLKAGKKVTARVIGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSA
LNTHSVSPVEKIRQYQAGQTVTCFFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLK
HPDKKFKIGQAIEATVVDPDVPRAFLCLSLIGPYRLEEGEVAMGRVMKVVPNRGLTVSFP
FGKVGKVSMFHLSDSYSEAPLEDFCPQKIVRCYILSTAHRVLTLSLRSSRTNRETKNRIE
DPEINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLTKYSHVSECVPPERELYNRCL
PEGKLVTAKVLCVNPMKNLIELSLLPSDTGRPDVFSPDPEPKQEERRGGAEGSQKRKEKN
QKEELQKSQKGGRGKRERQESESEQELVNKRPKKSGAPEEDDSGVEVYYREGEDEMEEPK
LPPRGKQTKSTEVPRLHLSSGFVWDVGLDSLTPALPLREESSDSEDEQPHQAKKKKSKKE
RELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIE
KARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLH
LADIYTKSEKFKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLP
AKEHVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQQAVRD
IFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEAKSSALED
NT seq
5568 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacctggaggaaagtttcccccgagggggaacacggaaaccccacaaaccagag
aagtcttcccagcaggtggttgaacaagacaacttatttgatgtttccacagaagaaggt
cccattaaaaggaaaaagagccagaaagggccagcaacaacaaaaaaattgaaaattgaa
aagagaaaatccatcaaatctatgaaagagaagtttgaaattcttagtcttgagtcccta
tgtgaggggatgcggattttgggctgtgtgaaggaggtgagtgagctggagctggtggtc
agccttcccaatggcctccaagggtttgtgcaagtgaccgaagtctgtgacgcctacact
cagaagctgaatgagcaggtggcacaagaagaacctctggaggacctgctccgcctgcct
gagctcttctcccctggaatgttggtgaggtgtgtggtgagcaacctggatgtcacagag
agcggcaagaagagcgtcaagctttctgtgaaccccaaacgtgtcaacaaagtgctgagt
gctgaggccctgaggcctggcatgctgctgacgggcacagtgtcaagcctggaagaccat
ggctacctagtggacattggcgttggtgggaccagagcttttctgtcacttcagaaggcg
caagagtacatccggcagaagaacaaaggtgctaagttcaaagtcggccagtacctgacc
tgtgtggttgaagaggtgaaaagcaacggaggagtcgtgagtctctctgtggagcactcc
gaggtttcctctgccttcgcaactgaggagcaaaggtggaacctgaataacttactacca
gggctgctggtcaaagcccaggtgcagaaggtaactcagtttggactccagctaaatttc
cttacgttcttcacgggcctggttgacttcatgcatctggagcccaagaaaatgggatct
tactcttcaaatcaaacggtaaaagcctgcatcctctgcgtccatcctcgcaccagagtt
gtgcgactgagcctgcgtcccatcttcctgcatcctgggcgtccactcacccgcatctct
taccagcagctaggggctgtgctggatgatgtccctgttcagggtttttttaagaatgct
ggggtcatcttcaggctgaaggatggggtactggcctacgcccgggtcagccatctctct
gattctaagaaagcattcaacgctgaggccttcaaaccggggagcactcacaagtgtaga
atcattgactacagccaaatggatgagctggccttgctctctctgcggaaatcaattatt
gcagccccattccttagatatcatgacatcaaaacagggacagtagtaaagggcacagtg
ctggccataaagccatttgggatcctggtgaaggtgggtgagcaaataaaaggcctggtg
ccctccatgcacctggctgacatcatgatgaagaacccagagaagaagtacagcccaggg
gatgaggtcaagtgcagggttttgctctgtgaccctgaagccaagaagctaattatgacc
ctgaaaaaaacccttgtcacatccaaactgcctctcctcacctgctatgagggtgccaag
cctggcctgcggacgcacggggttatcatacgggtcaaggactatggctgcattgtgaag
ttctacaacgatgtgcaggggctagtgcctaagcatgagcttagcacccagcacatcccg
gacccagagaaggtcttttacactggccaggtggtaaaggtggcagtgctgagctgtgag
ccttccaaggagaggatgctcctgtccttcagactgttgagtgactctgggccaaaggat
ccgagtgttgagagcagtcagaagaaaacaggagctgtgaacatcgggcagttggtggat
gtgaaggttctggagaagaccaaaactgggctggaggtggccatcctgccccacaacacc
cctgctttcctccccacgcctcacctgtccgaccacactgccaatggcccactgttgcac
cactggctccagacaggtgacacccttcaccgagttctgtgtctgagccagagtgagaga
cacattcttctttgcaggaagccagctttggtctccacagtagaaggtggccaggacccc
aagagcctctcagaaatccagcccggaatgctgctcattggttttgtgaagtgcatcaag
gagtatggcgtgttcgtccagttcccctcaggtctcagtggactgtcccccaaaactatc
atgagtgacaagttcgtaaccactccaagtgaacactttgtggagggtcagacagtcgtt
gctaaggtgaccaatgtggatgagtcgaagcagaggatgctgctgtctctgcggctgtca
gactgcagtctgggggattcggccagcaccagcttcctcctcctgtgccagtgcctggaa
gagctgcagggcattcgcagcctcatgagcaaccaagactctgtattgatccagacactg
gctgacatgaccccggggatggtccttgatgccgtggtccatgaggtgttagaagatggt
tcagtggtgttcagtagtgaccctgtgcctgacctggtcctgagagccagcaaataccac
cgggcagggcaggaggtggagcctggacagaagaagaaggtcgtggttctacacgtggac
atgttgaagttggaggtgcacgtttcccttcaccaggacttggtgaacaggaaacctaga
aagctgagaaaaagcagcagacaccagggaatcgtgcagcatctggaggagtcctttgcc
gtggcatccttggtggagactggccaccttgtggctttctctctgatctctcacctcaat
gataccttccactttgactctgagaagctgcgtgtggggcagggtgtctgcctcaccctc
aagaccacagaaccaggagtgaccggtctgattttggctgtggaagggccagcttctaag
aggaccaggatgccagttcggagggattcagagacagttgatgacaaaggagaggagaaa
gaggaggaggaggaggagaaggaagaagaggacttgactgtgaaggctaagaaaaggcat
agcctggctattggggacaaagtcaccgggaccattaaggctgtgaagggcacacatgtt
gttgtaaccctagctgatggcttcgttggctgtatccatgcctcccgcatcctagatgat
atcccagtgggcacctcgcctacgaccacactgaaagccgggaagaaagtcactgcgaga
gtgatcggtgggcgagatgtgaagacatctaagtttctcccaataagtcaccccagattt
gttctgaccatcctggagctgagtgttcggccaagtgagttgaagggtagctacagtgct
cttaatactcactctgtgagccccgtggagaagatcaggcagtaccaggctgggcagact
gtgacctgcttcttcaagaagtacaacgtgatgaagaagtggcttgaagtggacattgga
ccagacatccgagggagaattcccttgttgctcacttccctcagcttcaaggttctgaaa
cacccagacaagaagttcaagattgggcaggccatcgaggccaccgttgttgacccagac
gtccccagggctttcttatgtctgtcactcataggaccttacagacttgaagaaggtgaa
gtggccatgggccgagtgatgaaggtggtacccaacaggggactgaccgtctccttccct
tttgggaaggtagggaaagtcagtatgtttcacctgagcgactcgtactccgaggcaccc
ctggaggacttctgcccccagaagattgtcagatgttacatcctgtccacagcacaccgt
gtgctgactttgtcactacgatcatccaggacaaacagagagacaaaaaacagaatagaa
gatccagaaatcaactccattgaggacgtgaaggaagggcaactcctgcggggctatgtg
aaatgcgtcctgccaagcagtgtgatcataggccttggaccttcagttctgggtttgacc
aagtattcacatgtctctgagtgtgtcccaccagagagagagctttataacagatgcctc
cctgagggaaagctggtcactgccaaggtcctgtgtgtgaaccccatgaagaacctgata
gagctgtcgctccttcccagcgacactgggaggccagacgtgttctctcctgatccagaa
ccaaaacaagaggagaggagaggaggggctgaggggagccagaaaaggaaagagaagaac
cagaaggaagagctccagaagtcacagaagggtgggcggggcaagcgggagcgccaggag
tctgagagtgagcaggaactagtgaacaagaggccaaagaagtctggagcaccagaagaa
gacgacagtggtgtggaagtgtactaccgggaaggagaggatgagatggaggagccgaag
ctgcctcccaggggaaagcagacaaaatccacagaggtgccccggctgcatctctcttca
ggcttcgtttgggatgtggggctcgactctctgactccagccttgccactccgagaagag
agctcagacagcgaggatgaacagccgcaccaagccaagaagaagaagagcaagaaggag
agggaactggagaagcagaaggcagagaaggagctgtcgcgcattgaggaggcactcatg
gaccctgggcgacagccagagtctgcggatgactttgaccggctggtgctaagctccccc
aacagctccatcctttggctgcagtacatggctttccacctacaggccacggagatcgaa
aaggcccgggctgtggctgagagggccctgaagaccatctcgttcagagaggagcaggaa
aaactgaatgtgtgggtggccctactgaacctggaaaacatgtacggctctcaggagtcc
ctgactaaggtcttcgagcgagctgtgcagtacaacgaacctctcaaggttttcctgcat
ctggctgacatctacaccaagtccgagaaattcaaggaagctggtgagctgtacaaccgg
atgctgaaacggttccggcaggagaaggctgtctggatcaaatatggtgcctttgttttg
gggaggagtcaggctggggccagtcaccgggtgttgcagcgagccctggagtgcctgccc
gccaaggaacatgtggatgtgatcgtcaagtttgcccagctggagttccagctcggggac
gtggagcgcgctaaagccatttttgagaacacactgagcacctaccccaaacgcacagac
gtctggtcagtctacatcgacatgaccatcaagcacggcagccagcaagcagtcagggac
atctttgagcgggtcattcacctgagcctggcgcctaagaggatgaagttcttcttcaag
cgctacctggactatgagaagcagcacggcacggagaaggacgtgcaggcggtcaaggcc
aaggccttggagtacgtggaggccaagagctcggcgctggaggactag
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integrated database retrieval system
