Mus caroli (Ryukyu mouse): 110285521
Help
Entry
110285521 CDS
T05910
Symbol
Patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110285521 (Patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110285521 (Patl1)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110285521 (Patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
110285521 (Patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
110285521
NCBI-ProteinID:
XP_021007411
Ensembl:
MGP_CAROLIEiJ_G0022739
UniProt:
A0A6P5P4N8
LinkDB
All DBs
Position
19:9374901..9407669
Genome browser
AA seq
770 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PVAADEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMTAVQTRPILQPQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPLQGPEDDRDLSERALPRRSTSP
IIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGERISPNQLCSV
PNSSLLGHPFPPNVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQMLPPAPSFRAFFSAPPPATPPPQQHPPGPGPHLQNLRPQAPMFRADTTHLHPQ
HRRLLHQRQLQSRNQHRNLNGTGDRGGHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYQPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEEERPALMDERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMATARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQLM
NLPQSASAPAPSNSHLTAVLQNKFGLSLLLILLSRGEDLQSSDPAIESTQNNQWTEVMFM
ATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttggaggattgtcctctagatgaagatgaggatgcatttcaa
ggcctgggagaagaagatgaagaaattgatcaatttaatgatgatacctttgggtcaggt
gcagttgatgatgattggcaggaagcacatgagcgcctggctgagttggaagagaagcta
cctgtggcagctgatgaacaaacaggcaatggagagagagatgagatggatttgttgggt
gaccatgaggagaatctagcagaaaggctcagtaagatggtgattgaaaatgagctagaa
gatccagctatcatgacggcagtgcagaccaggccaattttacaacctcaaccgggaagt
ctgaattccagcatctgggatggatctgaagttctgaggcgaatccgtggaccactactt
gctcaggaaatgcctacagtgtctgtattagaatatgccttgcctcagaggcccctacag
ggcccagaagatgatcgggacctttctgagcgagctttaccaaggcggtcaacatcacct
atcattggaagtcctcctgttagagccgttcctataggcaccccacctaagcagatggct
gttcccagcttcaaccagcagattctgtgtccgaagcctgttcatgttcggcccccaatg
ccgccacgctatcctgctccctatggcgagaggatatctccaaaccagctctgcagtgtc
ccgaactcctccctcctgggccacccttttcctcctaatgttcctcctgtacttagtccc
ctgcagagagcacagcttcttgggggagcacagctacagcctggacgaatgtctcccagc
caatttgcacgggtccctggatttgttggtagcccactggctgccatgaatcctaagttg
ctacaagggcgcgttgggcagatgcttcccccagcaccaagcttccgtgccttctttagt
gctccaccccccgctacgccacctccacagcagcatccccctggcccaggacctcaccta
caaaacctcagacctcaggccccaatgtttagagcagacacaactcaccttcatccacag
caccggcgcctgttgcatcagaggcagctgcagagtagaaatcagcatcggaatctcaac
ggtactggagatagaggaggtcaccggtccagtcatcaagatcatctccggaaggatcca
tacgctaatctaatgttgcagcgggaaaaggattgggtctctaagatacagatgatgcag
ctgcagagcactgatccctacctggatgatttctattaccagaattactttgaaaaactg
gagaaattgtcagctgctgaagaaatacaaggtgatggccctaagaaggagcgtaccaag
ctcatcacccctcaggtggccaaactggagcatgcttatcagcctgtgcagtttgagggc
tctttggggaagcttactgtctccagtgtgaataatcctcggaagatgatagatgctgtt
gtgacatctcggagtgaggatgatgaaacaaaagaaaaacaagttcgggataagagaaga
aaaacccttgttataattgagaaaacctatagtttactccttgatgtggaggattatgaa
aggcgctatctcctaagtctagaagaagagcggcctgccctgatggatgaaagaaagcac
aaaatttgtagcatgtatgacaacctgaggggcaaattgcctggacaagagaggccaagt
gatgaccactttgtacagatcatgtgtatccgaaaagggaagagaatggttgcccgcatt
ctccctttcctctccacagagcaagcagctgacattctcatggcaactgccaggaacctc
cctttccttatcaagaaggacgcccaagatgaggtgctgccatgcttactgagtcccttc
tctctcctcctctatcatcttccttcagtgactgtcaccagccttctgcaacagctaatg
aacctacctcagagtgcaagtgcaccagcgccctccaactctcacctcactgctgtgctc
cagaacaagtttggcttgtcactgctcctaatcctactaagccgtggagaagacctacag
agttcagatcctgctatagaatcaacgcaaaataaccagtggacagaggttatgttcatg
gcaacccgagaacttctacggatcccccaagctgccctggccaaaccaatctctatccct
acaaatctagtgtcccttttttctcgctatgttgaccggcagaaactgaacttgctggaa
acaaaactgcagctggttcaggggatacggtaa
DBGET
integrated database retrieval system
