Mus caroli (Ryukyu mouse): 110285901
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Entry
110285901 CDS
T05910
Symbol
Vti1a
Name
(RefSeq) vesicle transport through interaction with t-SNAREs homolog 1A isoform X6
KO
K08493
vesicle transport through interaction with t-SNAREs 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
110285901 (Vti1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mcal04131
]
110285901 (Vti1a)
Membrane trafficking [BR:
mcal04131
]
SNARE
SNAP-25[N] (Qb)
Vti1
110285901 (Vti1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
V-SNARE
V-SNARE_C
LMBR1
Sec20
Peptidase_S46
DUF6987
Fusion_gly
Mer2
DUF5344
HAAS
FapA
Orf78
BPS1
Motif
Other DBs
NCBI-GeneID:
110285901
NCBI-ProteinID:
XP_021008023
Ensembl:
MGP_CAROLIEiJ_G0023085
UniProt:
A0A6P5P2H8
LinkDB
All DBs
Position
19:51784617..52092675
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AA seq
217 aa
AA seq
DB search
MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR
EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEVRNELLGDAGNSSENQRAHLLD
NTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLRDADANLGKSSRI
LTGMLRRIIQNRILLVILGIIVVIAILTAITFFVKGH
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgacttcgaagggtacgagcaggacttcgcagtgctcactgctgaaatcacc
agcaagattgccagggtccctcggctccctcccgatgagaagaagcaaatggttgccaat
gtggagaaacagcttgaagaggccagagaactgcttgaacagatggatttggaagttcga
gaaattccaccccaaagtcgaggaatgtatagcaacagaatgagaagctacaagcaagaa
atggggaaactggaaacggattttaaaaggtcacggatcgcctacagtgacgaagtacgg
aatgagctcctaggggatgctgggaattcctccgagaaccagagggcacatctgctggat
aacacggagaggctggaaaggtcatctcggagactagaggctgggtaccagatagcagtg
gagaccgagcaaatcggccaagagatgttggaaaacctgagtcatgacagagaaaagata
cagcgggcacgtgaccgactccgggatgcagatgcaaacctggggaagagctctcggatt
ctgacggggatgctgcgaagaatcatccagaaccgtatcctgctcgtcatcttggggatc
atcgtggtcatcgccatcctgacggccatcacgtttttcgtcaaaggacactga
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