Mus caroli (Ryukyu mouse): 110286219
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Entry
110286219 CDS
T05910
Symbol
Col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X2
KO
K06237
collagen type IV alpha
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04151
PI3K-Akt signaling pathway
mcal04382
Cornified envelope formation
mcal04510
Focal adhesion
mcal04512
ECM-receptor interaction
mcal04820
Cytoskeleton in muscle cells
mcal04926
Relaxin signaling pathway
mcal04933
AGE-RAGE signaling pathway in diabetic complications
mcal04974
Protein digestion and absorption
mcal05146
Amoebiasis
mcal05165
Human papillomavirus infection
mcal05200
Pathways in cancer
mcal05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
110286219 (Col4a5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110286219 (Col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110286219 (Col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
110286219 (Col4a5)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
110286219 (Col4a5)
09154 Digestive system
04974 Protein digestion and absorption
110286219 (Col4a5)
09158 Development and regeneration
04382 Cornified envelope formation
110286219 (Col4a5)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
110286219 (Col4a5)
09162 Cancer: specific types
05222 Small cell lung cancer
110286219 (Col4a5)
09172 Infectious disease: viral
05165 Human papillomavirus infection
110286219 (Col4a5)
09174 Infectious disease: parasitic
05146 Amoebiasis
110286219 (Col4a5)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
110286219 (Col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mcal04147
]
110286219 (Col4a5)
00536 Glycosaminoglycan binding proteins [BR:
mcal00536
]
110286219 (Col4a5)
Exosome [BR:
mcal04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
110286219 (Col4a5)
Glycosaminoglycan binding proteins [BR:
mcal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110286219 (Col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
110286219
NCBI-ProteinID:
XP_021008355
Ensembl:
MGP_CAROLIEiJ_G0033459
UniProt:
A0A6P5NXX6
LinkDB
All DBs
Position
X:130000339..130211921
Genome browser
AA seq
1685 aa
AA seq
DB search
MQVRGVCLAAGWFLLALCLWGQPAEAAACHGCSSGSKCDCSGIKGEKGERGFPGLEGHPG
LPGFPGPEGPPGPRGQKGDNGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQG
IPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSPLPGPKGNQGFPGSPG
IQGPPGPKGISGPSGPPGPPGLMGPPGPPGPPGPKGNMGLNFQGPKGEKGEQGLQGPPGP
PGQISEQKRPIDIEFQKGDQGVPGDRGPPGPPGIPGPPGRPGGVKGEKGEPGEAGKRGKP
GKDGETGQPGIPGLPGDPGYPGEPGRDGEKGQKGDIGPPGPPGLVIPAPGTGVTMGEKGN
IGLPGLPGEKGERGFPGIQGPPGFPGPPGTSVVGPPGPPGYPGERGQKGDEGPPGICIPG
SPGLDGQPGAPGLPGPPGPPGPQLPSRDEICKAGPPGPPGPPGDKGLQGEQGVKGDKGDT
CFNCIGTGISGPPGQPGLPGLPGPPGSLGIPGEKGDKGQAGITGLKGLPGIPGPPGAPGF
PGSKGDPGDVLTLPGMKGDKGELGFPGAPGLPGLPGSPGKDGLPGLPGPKGEPGGITFKG
ERGPPGSPGLPGLPGNMGPTGPVGFGPPGPIGEKGIKGVAGNPGQPGLPGPKGDPGQTIT
QPGKPGLPGSPGRDGEVGLPGDPGLPGQPGLPGIPGSKGEPGIPGTGPPGPPGPKGFPGI
PGPPGAPGAPGRMGPDGPPGSPGSPGPKGEPGFGLPGPPGPPGFPGFKGTPGPKGDRGFP
GPTGPPGRTGLDGLPGPKGDVGPNGQPGPVGPPGLPGIGLQGPPGPPGTPGPIGQPGLHG
IPGEKGDPGPPGFDVPGLPGERGSPGVPGAPGLIGPPGSPGVPGKAGVPGFPGVKGEMGM
MGPPGPPGPLGIPGRSGAPGLKGDDGMQGQPGLPGPAGEKGSKGEPGLPGPPGPMHPDFL
GSKGEKGEPGLPGIPGLSGPKGYQGLPGDPGQPGLSGQPGSPGLPGPKGNPGLPGPPGLT
GPPGPKGNIGDMGFPGPQGVDGPPGPPGFPGQPGSPGLPGQKGSKGEPGVSGIGLPGLPG
PKGEPGLPGYPGNPGIKGSVGETGLPGLPGNPGAKGQPGLPGFPGTPGLPGPKGMNGPPG
NPGFPGEPGPVGAGGRPGPPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGIPGPPGLPGL
SGQKGDGGSPGLPGNPGLPGSKGEPGFQGFPGMPGPPGPPGSPGQALEGPKGNPGPQGPP
GRPGPPGTEGPRGPPGNGGIKGERGNPGPPGQPGLPGLKGDQGPPGLPGNPGRPGLNGMK
GDPGLPGVPGFPGMKGPIGVPGSTGPDGEPGLTGPPGPPGLPGPSGQSIVIKGDPGPPGI
PGQPGLKGLPGLPGPQGLPGPIGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGARGLDGP
PGPDGLQGPPGPPGTTSVAHGFLITRHSQTTDAPQCPRGTVHIYEGFSLLYVQGNKRAHG
QDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMNMEPLKGQSIQPF
ISRCAVCEAPAVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTSAGAEGSGQALASPGSC
LEEFRSAPFIECHGRGTCNYYANSYSFWLATVDMSDMFSKPQSETLKAGDLRTRISRCQV
CMKRT
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtgcgtggagtgtgcctggctgccggctggttcttactggccctgtgtctgtgg
gggcagcccgcagaggctgcggcctgccatgggtgttcttctggatcaaaatgtgactgc
agtggtataaaaggagaaaagggagaacggggatttccaggtttagaaggtcatccaggt
ttaccaggatttccaggtccagaaggccctccaggacctcggggacaaaagggtgataat
ggaattccagggccaccaggaccaaaaggaatcagaggccctcctggacttcctggattt
ccggggacaccaggtcttcctgggatgccaggccatgatggggctccaggacctcaaggt
atccctggatgcaatggaaccaagggagaacgtggatttccaggcagtccaggctttcct
ggtttacaaggtcctccaggacctcctgggatcccaggtatgaagggggaaccaggcagt
ataatcatgtcaccactgccaggaccaaagggtaatcaaggattcccaggttctcctgga
atacaaggtccacctggtcccaagggtatatcagggccaagtggtcctccaggaccacca
ggtttaatgggacctcctggcccaccaggcccaccaggaccaaaggggaatatgggctta
aatttccagggacccaaaggtgaaaaaggtgaacaaggtcttcagggcccacctggtcca
cctgggcagatcagcgaacagaaaagaccaattgacatagaatttcagaaaggagatcag
ggagtccctggtgatagagggcctcctggacctccaggaatacctggtcctcccggacgt
cctggtggtgtgaaaggtgaaaagggtgagccaggagaggcaggcaaaaggggtaaacca
ggcaaagatggagagactggccaaccaggaatcccaggtttgcctggtgatcctggttac
cctggtgaaccaggaagggatggtgaaaagggccaaaagggtgatattggcccacctgga
cctcctggacttgtaattcctgcacctggaactggtgtgactatgggagaaaaaggaaat
atcgggttacctggtttgcctggagaaaagggagagcgaggatttcctggaatacaaggt
ccacctggctttcctggacctccaggaacatcagtcgtgggtccccccggtcctcctgga
tatcctggtgaaaggggccagaaaggtgatgaaggtccccctggaatttgtattcctgga
tctcctggacttgatggacagcctggggctcctggccttccaggacctcctggtccccct
ggtccccagttgccatccagagatgaaatctgtaaagcaggccctcctgggcccccagga
cctccaggtgataaaggactccaaggagagcaaggagtaaaaggtgacaaaggtgatact
tgcttcaactgtattggaactggcatttcagggcctccaggccaacctggtttaccaggt
ctcccaggtcctccaggatctcttggaatccctggagagaagggtgacaaaggacaagct
gggataactggtctgaaaggattgccaggcatacctggacctccaggtgctccaggcttt
ccagggtctaagggtgaccctggggatgtcctcactcttccaggaatgaagggtgacaaa
ggagagttgggtttccctggagctccagggcttcctggtctacctggtagtcctggaaag
gatggtttgccaggactccctggccccaagggagagcctggtggaattacttttaagggt
gaaagaggtcctcctgggagcccaggtttaccaggtctcccaggaaatatgggacctaca
ggcccagttggttttgggcctccaggccctataggagaaaaaggcataaaaggtgtggca
ggaaatccaggccagccgggattaccaggtcctaaaggagatccaggccagaccataacc
cagccaggaaagcctggtttgccaggtagtccaggcagagatggtgaagtgggtcttcca
ggtgatcctggacttccaggccaaccaggcctgccaggaataccaggtagcaaaggagaa
ccaggtatccctgggactgggcctcctggaccacctggtcctaaaggttttccaggaatt
ccgggacctccaggagctcctggggcccctggaagaatgggtccagatgggcctcctggg
tcaccaggctccccaggaccaaagggagagccaggatttgggttacctgggccacctggg
ccaccaggattcccaggtttcaaaggaacacctggtccaaaaggtgatcgtggtttccca
ggacctacaggtcctccaggacgcactggcttggatgggctacctggaccaaaaggtgat
gttggaccaaatggacaacctggtccagtagggcctccagggctaccaggaattggtctt
cagggaccaccaggaccaccagggactccagggccaataggccaacctggcttacatggg
attccaggagagaagggggacccaggacctcctgggtttgatgttccaggactccctgga
gagagaggtagtccaggggtccctggagcccccggtcttataggacccccaggatcacct
ggtgtccctggaaaagcaggtgtccctggatttccaggtgtcaaaggcgaaatgggtatg
atgggacctccaggcccacctggacctttgggaattcctggcaggagtggtgctcctggt
cttaaaggtgatgatggcatgcaaggtcagccaggtctccctggccctgcaggagaaaag
ggcagtaagggagagcctggccttccaggtcctcctggaccaatgcatccagatttcctg
ggatcgaaaggagaaaagggtgagcctggcttaccaggtattcctggactttcaggacca
aaaggataccagggattacctggagacccagggcaacctggactgagtggacaaccagga
tcaccaggactcccaggtcccaagggtaatcctggtctccctggtccaccaggacttaca
ggacctcctggaccaaaaggaaacattggtgacatgggttttcctggccctcaaggtgta
gatgggccccctggacctcctggatttcctggacaacctggctctcccgggttacctggc
cagaaaggaagtaaaggagagcctggggtttcaggcattggacttccaggtcttcctggc
ccaaagggtgaacctggtctgcctggatatccaggaaacccaggtatcaaaggttctgtg
ggagagactggtcttcctggattaccaggaaaccctggagcaaaaggtcaaccgggcctg
cctggattcccaggaacaccaggacttcctggcccaaaaggtatgaatggtcctcctggt
aaccctggctttcccggagaacctggtcctgtaggtgctggagggcgtcctggaccacca
ggacctcctggtgaaaaaggcaagccaggtcaagatggcattcctgggccagcaggacaa
aagggagaaccaggtcaaccaggctttggaatcccaggacctcctggactcccaggactt
tctggacaaaagggtgatggaggatcacctggacttccaggaaatcctggccttccaggt
tcaaagggtgagccaggctttcagggattccctggtatgccaggtcctccaggtcctcct
ggttctcctggtcaagctttggaaggtcccaaaggaaaccctgggcctcaaggccctcct
gggagaccaggtccaccaggtacagaaggtcctcgtggcccccctggaaatggaggtatc
aaaggagagaggggaaatccaggcccacctgggcaaccaggcttacctggtttgaaagga
gatcaaggaccaccaggactcccgggtaaccctggccggccaggtcttaatggaatgaaa
ggagatcctggtctccctggtgttccaggattcccaggaatgaaaggacccattggagta
ccaggctccactggccctgatggggaaccaggtcttactgggcccccaggtcctcctggg
ttgcctggtccttcaggacagagtattgtaatcaaaggagatcctggacctccagggatt
cctggacaacctggattaaaaggtctaccaggacttccaggccctcaaggcctaccaggt
ccaattggccctccaggagatccaggacgcaatggactcccaggctttgatggtgcagga
gggcgcaaaggagacccaggtctgccaggacagccaggtgcccgtggattggatggtccc
ccaggaccagatggattgcaaggacctccaggaccccctggaaccacctctgttgcccat
ggattcctcatcacacgtcacagtcaaacaacagatgcaccacaatgcccacggggaaca
gtgcatatctatgaaggcttttctctcctgtatgtacaaggaaataaaagagcccatggt
caagacttgggtacggctggcagctgccttcgtcgcttcagtaccatgcctttcatgttc
tgcaacattaacaacgtttgtaactttgcttcaagaaatgactattcttactggctttcc
accccagagcccatgccaatgaacatggaacccctgaagggacagagcatccagccattc
attagtcgatgtgcagtgtgtgaggcgccagctgtggtgatcgctgttcacagccagact
attcagattccacactgtcctcaggggtgggactctctgtggattggctattccttcatg
atgcatacaagtgcaggagcagaaggctctggccaagccctagcctctcctggctcctgt
ttggaagaatttcgttcagctcccttcatcgaatgtcacgggcgagggacatgcaattac
tatgccaattcgtacagcttttggctggccactgttgatatgtcagacatgttcagtaaa
cctcagtcagaaacactgaaagcaggagacttgaggacacgtattagccgatgtcaagta
tgcatgaagaggacataa
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integrated database retrieval system
