Mus caroli (Ryukyu mouse): 110287120
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Entry
110287120 CDS
T05910
Symbol
Ptchd1
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
mcal04990
]
110287120 (Ptchd1)
Domain-containing proteins not elsewhere classified [BR:
mcal04990
]
Other domain-containing proteins
Patched domain-containing proteins
110287120 (Ptchd1)
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Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
110287120
NCBI-ProteinID:
XP_021009449
Ensembl:
MGP_CAROLIEiJ_G0033520
UniProt:
A0A6P5P083
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All DBs
Position
X:complement(144308532..144362616)
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AA seq
888 aa
AA seq
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MLRQVLHRGLRTCFSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQH
SLAKIERNLVNSLFPVNRSKHRLYSDLQTPGRYGRVIVTSYQKANMLDQHHTDLILKLHT
AVTKIQVPRPGFNYTFAHICVLNNDKTCIVDDIVHVLEELKNARATNRTNFAITYPITHL
KDGRAVYNGHQLGGVTVHSKDRVKSAEAIQLTYYLQSINSLNDMVAERWESSFCDTVKLF
QKSNSKVKIYPYTSSSLREDFQKTSRVSERYLVTSLILVVTMAILCCSMQDCVRSKPWLG
LLGLVTISLATLTAAGIINLTGGKYNSTFLGVPFVMLGHGLYGTFEMLSSWRKTREDQHV
KERTAEVYADSMLSFSLTTAMYLVTFGIGASPFTNIEAARIFCCNSCIAILFNYLYVLSF
YGSSLVFTGYIENNYQHSIFCRKVPKPDVLQEKPAWYRFLLTARFSEETAEGEEANTYES
HLLVCFLKRYYCDWITNTYVKPFVVLFYLIYISFALMGYLQVSEGSDLSNIVATATQTIE
YTTAHQKYFNNYSPVIGFYIYESIEYWNSSVQEDVLEYTKGFVRISWFESYLNYLRKLNV
STDLPKKNFTDMLRNSFLKAPQFSHFQEDIIFSKKYNDEVDVVASRMFLVAKTMETNREE
LYDLLETLRRLSVTSKVKFIVFNPSFVYMDRYASSLGAPLHNSCISALFLLFFSAFLVAD
SLINVWITLTVVSVEFGVIGFMTLWKVELDCISVLCLIYGINYTIDNCAPLLSTFVLGKD
FTRTKWVKNALEVHGVAILQSYLCYIVGLFPLAAVPSNLTCTLFRCLFLIAFVTFFHCFA
ILPVILTFLPPSKKKRKEKKNPENREEIECVEMVDIDSTRVVDQITTV
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgctgcggcaggttctgcacaggggcttgaggacgtgtttctcccggcttggccacttc
attgccagtcacccggtcttctttgcttcggcgccggtgctcatctccatcctgctcggc
gccagcttcagccgctaccaggtcgaagagagcgtggagcacctgctggcgccccagcac
agcctagccaagatcgagcgcaacctagtcaacagcctcttcccggtcaaccgctccaag
caccggctctactcggacctgcagacccctgggcgctacggccgggtcattgtcacctcc
taccagaaagccaacatgctagaccagcatcacacggacctgatcttaaagttgcatact
gcagtgaccaagatccaggttccaaggcctggatttaactatacatttgcccacatatgt
gtcctgaataatgataagacttgcattgtggatgacatagtacacgtcctggaagagcta
aagaatgctcgggccaccaatcggaccaattttgctatcacatatccgatcactcactta
aaagatggaagggctgtctataatgggcaccaactcggaggtgtcactgtgcacagcaag
gatcgggtgaaatctgcagaggccattcagcttacctactatctgcaatcaatcaacagt
ctcaatgacatggtagctgagaggtgggagtccagcttctgtgacactgtcaaactattc
cagaaatccaacagcaaagtcaaaatatacccgtacacatcctcatcactgagggaagat
ttccagaagaccagccgtgtatcagaacgttacctggtcaccagcctgatcctggtagtc
accatggctattctgtgctgctctatgcaggactgtgtccgcagcaaaccctggttaggc
ctacttgggttggtgaccataagcctagccactctcactgcagccggaatcatcaatctt
actggtggaaaatacaactccaccttcctgggagtccctttcgtcatgctaggtcatgga
ttatacgggacttttgaaatgttatcctcgtggaggaaaaccagagaggaccaacatgtt
aaagagcgaactgcagaagtctatgcagactccatgctctccttctctctcaccactgcc
atgtacttggtcaccttcggcatcggggccagccctttcacgaacattgaggcagccagg
attttctgctgcaactcctgtattgcaatcctcttcaactacctctatgtactctcattt
tatggttccagccttgtgttcactggctacatagaaaataattaccagcatagtatattc
tgtagaaaagttccaaagcctgatgtattacaggagaagccagcatggtataggtttctt
ctgacggctagattcagtgaggaaacagctgaaggtgaggaagcaaacacctatgagagt
cacttattggtatgtttcctcaaacgctattactgtgactggataaccaacacctatgtc
aagccttttgtagtcctcttttaccttatttatatttcctttgccttaatgggctatctg
caggtcagtgaagggtcagaccttagtaacatcgtagcaactgcaacacaaaccattgag
tacactactgcccaccaaaagtactttaacaactacagtcctgttattgggttttacata
tatgagtccatagaatattggaactctagtgtccaagaagatgttctagagtacactaag
ggttttgtgcggatatcctggtttgaaagctatttaaattatcttcggaaactcaatgtg
tccactgacttgcctaagaaaaatttcacagacatgttgaggaattccttcctgaaagct
cctcaattttcacattttcaagaggacatcatcttctctaaaaagtacaatgatgaggtt
gatgtagtggcctctagaatgtttttggtggccaagactatggaaacaaatagagaagaa
ctttatgatctcttggagactctgaggaggctttcagtcacctccaaggtgaagttcatt
gtctttaatccgtcttttgtgtacatggatcgatatgcctcctctctgggagcccccctg
cacaactcctgcatcagtgctttgttcctgctcttcttctcggcattcctggtagcagat
tcgctgatcaatgtctggatcactctcacagttgtgtctgtggagtttggagtaataggc
ttcatgacattatggaaagtcgaactggattgcatttctgtgctatgcttaatttatgga
attaactacacaattgacaactgtgctccactgttatccacatttgttctaggcaaggat
tttacaagaactaaatgggttaaaaatgccctggaagtgcatggggtagctattttacag
agttacctctgttatattgttggtctatttcctcttgcagctgtgccttcaaatctgacc
tgtacactgttcaggtgcttgtttttaatagcatttgtcaccttctttcactgctttgcc
attttacctgtgatacttactttcctgccaccctctaagaaaaaaaggaaagagaagaaa
aatcctgaaaaccgggaggaaattgagtgtgtagaaatggtagatattgatagtactcga
gtggttgaccaaataaccacagtgtga
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