KEGG   Mus caroli (Ryukyu mouse): 110288243
Entry
110288243         CDS       T05910                                 
Name
(RefSeq) aly/REF export factor 2-like
  KO
K12881  THO complex subunit 4
Organism
mcal  Mus caroli (Ryukyu mouse)
Pathway
mcal03013  Nucleocytoplasmic transport
mcal03015  mRNA surveillance pathway
mcal03040  Spliceosome
mcal05014  Amyotrophic lateral sclerosis
mcal05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110288243
  09122 Translation
   03013 Nucleocytoplasmic transport
    110288243
   03015 mRNA surveillance pathway
    110288243
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    110288243
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    110288243
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcal03019]
    110288243
   03041 Spliceosome [BR:mcal03041]
    110288243
Messenger RNA biogenesis [BR:mcal03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     110288243
    TREX complex
     110288243
Spliceosome [BR:mcal03041]
 Complex C
  Other components
   EJC/TREX
    110288243
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    110288243
SSDB
Motif
Pfam: RRM_1 TFIIA Pinin_SDK_memA EOS1 DDHD MRP-S26 DUF7500
Other DBs
NCBI-GeneID: 110288243
NCBI-ProteinID: XP_021010299
UniProt: A0A6P5P2E7
LinkDB
Position
Unknown
AA seq 290 aa
MLDPRPAMADKIDMSLEDIIKLNKIQQGHHGRPDYRVNRGTRPKKYGPPVTHGGRKRLPP
YCRPKQLSDKWQHDLFIGDFMGQTHVDTGGKLFVSNLHFGVSDADIQLLFAEFGTLKKSA
VHYDRCGRSLGTAHLHFEREADALNAMREYNGASLDGRPMNIQLVTSKIDRQGRPAQSRN
RGGMKRNPGSGGLSGXGTKRWTLGGSQGREKGGTSRNSKLQQQKKKQLEQQQQQQEQQEQ
QQEQQQEQQQEQQQQHISKEELDVQLDDYQEIMDSSYTTEQSCTRSGPRA
NT seq 872 nt   +upstreamnt  +downstreamnt
atgctggatccaaggcccgccatggctgacaaaatagacatgtctttggaagacatcatt
aagctgaacaagatccagcaaggacatcatggcaggcctgattaccgggtgaatcgaggc
actagacctaagaagtatgggccacctgtcacccatggtggaaggaaaaggcttccacca
tactgcagaccaaaacaactttcagacaagtggcagcatgacctattcattggagacttc
atgggtcaaacccacgtggatactggtgggaagctgttcgtgtcaaatctgcacttcgga
gtgtcagatgctgatattcagctactctttgctgaatttggaacgttgaaaaaatctgct
gtgcactatgatcgctgtggaagaagtttagggacagcacatctgcactttgaaagggaa
gcagatgccctgaacgccatgagagagtacaatggcgcctctttggatggccgccctatg
aacatccagcttgtcacctcaaagattgatagacaaggaagacctgcacaaagcagaaac
aggggtggcatgaaaagaaaccctggctctggaggattaagtggtncaggcaccaagaga
tggacacttggaggcagccagggaagagagaaaggaggcaccagcaggaactcaaaactg
cagcagcagaagaagaagcagttggagcagcagcaacagcagcaggagcaacaagagcag
cagcaggagcagcagcaggagcagcagcaggagcagcagcagcagcacatatctaaagag
gagcttgatgtccagctggatgattatcaggaaattatggacagcagctacacaactgag
caaagctgcacaagatcgggacccagagcctg

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