Mus caroli (Ryukyu mouse): 110289303
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Entry
110289303 CDS
T05910
Symbol
Rc3h1
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcal03000
]
110289303 (Rc3h1)
04121 Ubiquitin system [BR:
mcal04121
]
110289303 (Rc3h1)
Transcription factors [BR:
mcal03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
110289303 (Rc3h1)
Ubiquitin system [BR:
mcal04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110289303 (Rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
TPD52
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
110289303
NCBI-ProteinID:
XP_021011117
Ensembl:
MGP_CAROLIEiJ_G0014756
UniProt:
A0A6P5PAD9
LinkDB
All DBs
Position
1:151509311..151575539
Genome browser
AA seq
1129 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQIPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAPILSDE
SAVDLSNRKPPALPNGIASSGSTVTQLIPRGTDPSFDSSLKPVKLDHLSSSAPGSPPDLL
ESAPKSISALPVNPHPVPPRGPTDLPPMPVTKPIQMVPRGSQLYPAQQADVYYQDPRGSA
PAFETAPYQQGMYYTPPPCVSRFVRPPPSAPEPGPPYLDHYSPYLQDRVINSQYGTQPQQ
YPPMYPTHYDGRRVYPAQSYTREEVFRESPIPIDIPSAAVPSYVPESRERYQQVEGYYPV
APHPAQIRPPYPRDPPYSRLPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTL
PPAFHPEEFLDEDLKVAGKYKANDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEMMN
VESKGMRDQRLDLQRRAVETSDDDLIPFGDRPTVSRFGAISRTSKTLYQGAGPMQAIAPQ
GAPTKSINISDYSAYGAHGGWGDSPYSPHANIPPQGHFIEREKMSMAEVASHGKPLLSAE
REQLRLELQQLNHQIQQTQLRGLEAVSNRLVLQREVNTLASQPQPPPLPPKWPAMISSEQ
LSLELHQVEREIGKRTRELSMENQCSVDMKSKLGTSKQAENGQPEPQNKIPTEDLTLTFS
DVPNGSALTQENLSLLSNKTSSLNLSEDSEGGGDNNDSQRSGVVSNSAP
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggatttcctttcctgcccaatttgcactcagact
ttcgacgaaacaattcgaaagcccatcagcttgggctgtggccatactgtctgcaaaatg
tgcctgaataaactccaccgtaaggcttgcccatttgaccagaccactatcaatacggac
attgagctccttcctgtgaactcagcattactgcagctagtgggtgctcagatccctgag
caacagcccattactttgtgtagtggggttgaagatacaaagcattatgaggaagccaag
aaatgtgtagaagaattagcattgtacctgaagccactcagcagtgcgagaggtgtgggt
ctgaatagcactactcagagtgttctgagtcgcccaatgcagaggaaacttgtgactctg
gttcattgccagctagtggaagaagaaggcaggatccgtgctatgagggctgctcgatct
ttaggtgaacgcacagttacagagctcattctccagcaccagaatcctcagcaactctct
tctaatctctgggcagcagtcagagctaggggctgccagttccttggaccagcgatgcag
gaggaagctctgaagctggtcttgctggccttggaagatggttctgcattgtctcggaaa
gtgttggttctctttgtggtgcaaagactggagccacgttttcctcaagcctctaaaacc
agcattgggcatgttgttcagctcctctacagagcctcctgcttcaaggtcaccaaacgc
gatgaagactcttctttgatgcaactgaaagaagaatttaggacttatgaagctctgagg
cgagaacatgactcccagatagtgcaaattgctatggaagctggcttaaggattgcacca
gaccagtggtcctctttgctttatggggatcagtctcacaaatctcatatgcagtctatt
attgacaagttacagacccctgcctcatttgcacagagtgttcaggagctaacaattgct
ctccagcggactggagacccagcaaatttgaaccgactaagaccccatttggagctactc
gcaaacattgaccctagtccagatgctcctcctccaacatgggaacagctagaaaatgga
ctggttgctgtacgtacggtagtacatggattggttgattatatccagaaccacagcaaa
aaaggagcagatcaacaacagcctccacagcatagcaaatacaaaacatacatgtgtcga
gatatgaagcaaaggggaggatgccctcgtggtgccagctgtacgtttgcacattcacag
gaagaactggaaaaatttcgcaaaatgaacaaacgtctggttcccagaagacccttgagt
gcctctttgggtcaacttaatgaggtgggcctgccttcagcacctatactttccgatgaa
agtgcagtggacttgtccaacagaaaacctcctgcactcccaaatggaattgcatcatca
gggagcacagtgacacaactgattccacgtgggacagaccccagctttgattcttctctg
aaaccagtaaagctagaccacctgagcagcagtgctccagggtcccctcctgacctgctg
gaatctgcccctaagagtatttctgccttacctgtgaatccacatcctgtacctccaagg
ggaccaacagatctgcctcccatgcctgtcaccaaaccaattcagatggtacctcgaggt
tctcagctatatccagcacaacaagcagatgtttattatcaggatcctcgaggaagtgcc
ccagcttttgagacagcaccttaccagcagggtatgtactatactccaccaccgtgtgtg
tcccgctttgtccgacctccaccatctgctcctgaacctggtcctccatacttggatcat
tattcaccctacctccaagatcgtgtcataaactctcagtatggcacacagccacaacag
tacccacctatgtacccaactcactacgatggccgccgtgtataccctgctcagtcttat
acaagagaggaggtgttccgggaaagccctatacccattgacattccatctgcagcagtg
ccatcctatgtacctgagtccagagagcgataccaacaggtagagggctactacccagtg
gctcctcatccagctcagatcagacctccataccccagggatcctccttatagtcggctt
cctcctccccaaccccatcctagtctggatgagctacatcgaaggcggaaggaaataatg
gcccagctagaggaaagaaaagtcatctctccacctccttttgcaccttcaccaacattg
cctcctgcgttccatccagaggaatttttggatgaagacttgaaggtagccggaaaatac
aaagcaaatgattatagccaatattctccttggtcatgtgataccatcggctcctacatt
ggaaccaaagatgcaaaacccaaagatgttgtggcagcggggagtgtggaaatgatgaat
gtagaaagtaaaggaatgagagaccagaggttggatcttcagagaagagcagtggaaacg
agtgatgatgacctcatcccatttggagaccgaccaacagtatctcgatttggtgccatc
tctcgaacatccaaaacactgtatcagggtgctggcccaatgcaagctatagcacctcag
ggagcacccacaaaatctattaacatttccgattacagtgcatatggagctcatggtggc
tggggagattctccatactcacctcatgcaaacatacctcctcagggacacttcattgag
agggagaaaatgtccatggcagaagtggccagtcatggaaaaccccttctatctgctgaa
agagaacaattacggctagagttgcagcagctgaaccatcagatccagcagacccagcta
cgaggactagaggctgttagtaaccggctggtgttacagagggaggtgaacaccctggca
agccagccacagccccctccactgcctccaaaatggcctgcaatgatttcaagtgagcag
ctcagcttggaactgcatcaggtggaaagagaaattgggaagaggacccgggaattgagt
atggagaaccagtgttctgtagacatgaaaagcaaactgggtacaagcaagcaagcagaa
aatggccagcccgagccacaaaacaagatccccactgaggaccttacgttgacattcagt
gatgtaccaaatggatcagccttgacacaagagaatctcagcctcctatcaaacaagacc
agctctctgaacctgtcagaagactctgagggaggaggagataacaatgattcccagaga
tcaggagttgtttccaattctgctccctag
DBGET
integrated database retrieval system
