Mus caroli (Ryukyu mouse): 110289518
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Entry
110289518 CDS
T05910
Symbol
Ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04622
RIG-I-like receptor signaling pathway
mcal05161
Hepatitis B
mcal05162
Measles
mcal05164
Influenza A
mcal05168
Herpes simplex virus 1 infection
mcal05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
110289518 (Ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
110289518 (Ifih1)
05171 Coronavirus disease - COVID-19
110289518 (Ifih1)
05164 Influenza A
110289518 (Ifih1)
05162 Measles
110289518 (Ifih1)
05168 Herpes simplex virus 1 infection
110289518 (Ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
mcal04054
]
110289518 (Ifih1)
Enzymes [BR:
mcal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110289518 (Ifih1)
Pattern recognition receptors [BR:
mcal04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
110289518 (Ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
ResIII
Helicase_C
DEAD
CARD
SNF2-rel_dom
SWI2_SNF2
DUF3638
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110289518
NCBI-ProteinID:
XP_021011418
Ensembl:
MGP_CAROLIEiJ_G0023594
UniProt:
A0A6P5PAP3
LinkDB
All DBs
Position
2:complement(57422132..57470412)
Genome browser
AA seq
1025 aa
AA seq
DB search
MSIVCSAEDSFRNLILFFRPRLKMYIQVEPVLDYLDFLSAETKEQIFKKINTCGNTSAAE
LLLSTLEQGQWPLGWTQTFVDALEHSGNPLAARYVKPTLTDLPSPSSETAHDECLHLLTL
LQPTLVDKLLINDVLDTCFEKGLLTVEDRNRISAAGNSGNESGVRELLRRIVQKENWFST
FLDVLRQTGNDALFQELTGGGCPEDNTDLADSSHRDGPAANECLLPAVHESSLETEARNA
EDVSPEASCTDSSVTTESDTSLAEGSVSCFDESLGHNSNMGRDSGTMGSDSDESVIQTKR
TSPEPELQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKV
IVLVNKVMLAEQLFRKEFNPYLKKWYRIIGLSGDTQLKISFPEVVKSYDVIISTAQILEN
SLLNLESGEDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPVV
PLPQILGLTASPGVGAAKKQSEAEKHILNICANLDAFTIKTVKENLGQLKHQIKEPCKKF
VIADDTRENPFKEKLLEIMASIQTYCQKSPMSDFGTQHYEQWAIQMEKKAAKDGNRKDRV
CAEHLRKYNEALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDSDVSDDEASSCNDQLK
GDVKKSLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRNTILEQFTRSEESSR
GIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKFRT
GEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVTSSGSGV
TEREIVNDFREKMMYKAINRVQNMKPEEYAHKILELQVQSILEKKMKVKRSIAKQYNNNP
SLITLLCKNCSMLVCSGENIHVIEKMHHVNMTPEFKGLYIVRENKALQKKFADYQTNGEI
ICKCGQAWGTMMVHKGLDLPCLKIRNFVVNFKNNSPKKQYKKWVELPIRFPDLDYSEYCL
YSDED
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattgtctgttctgcagaggacagcttcaggaatctcatcttattcttcaggccc
aggctgaaaatgtacattcaggtggagccggtgctggactacctcgactttctgtccgca
gaaaccaaagagcagatttttaaaaagatcaacacctgtggtaacaccagcgcggcagaa
ctgctgctgagcaccttggagcagggacagtggccgctgggatggacacagacgttcgtg
gatgccctcgagcacagtggcaatcccctagccgcgcgctatgtcaaacccacactcact
gatctgccctctccttcctctgagactgcccatgacgagtgtctccacttgctgaccctc
ctccagcccactttggtggacaaacttctgattaacgatgtcttggacacttgcttcgag
aagggactgttgacagtcgaggacagaaatcggatttctgctgcaggaaacagtgggaat
gagtcaggggtaagagagctgctgagaaggattgtgcagaaggaaaactggttttctacc
ttcctggatgttctgcgccaaactggaaatgatgcactattccaagagctgacaggtgga
ggctgcccagaagacaacacagacttggctgactcgtctcacagagatgggcctgcagct
aatgagtgtcttctgcctgctgtccatgagtcaagtctggagacagaggccaggaacgca
gaggacgtgtcaccagaggcttcttgtacagattcgtctgtgaccacagaatcagacaca
agtttggcagaaggaagtgtcagctgcttcgatgaaagtcttggacataacagcaacatg
ggcagggattcaggcaccatgggaagtgattcagatgaaagtgtcatccagacaaaaaga
acatcccccgagccagaactgcagctcagaccttaccaaatggaagtggcccaaccagcc
ctagatgggaagaatattattatctgcctccccacggggagtgggaaaaccagagtggct
gtttacatcaccaaagatcacttagacaagaagaagcaggcatctgaatccgggaaggtt
atcgttcttgtcaataaggtaatgttagcagaacaacttttccgaaaagagttcaacccg
tatttgaagaaatggtatcgcattattggattaagtggcgatacccagctgaaaatatca
tttccagaagttgtcaaatcttacgatgttattatcagcacagctcaaatccttgaaaac
tccctcttaaatctggagagtggagaagatgacggtgtgcagctgtcagacttctccctc
attatcattgatgagtgccatcacaccaacaaggaggcagtctataacaacatcatgaga
cgatatttgaagcagaagctgagaaacaatgacctcaagaaacaaaacaaaccagtcgtt
cccctgccgcagatactaggactgacagcttcacctggtgtcggagcagccaaaaagcag
tctgaggctgaaaaacatattttaaatatatgtgccaatcttgatgcctttaccattaaa
acagtgaaagagaatcttggtcaactcaaacaccaaataaaggaaccatgcaagaaattt
gtgattgctgatgacaccagagaaaatccatttaaagagaaacttctagaaattatggca
agcattcagacttactgccaaaagagtccaatgtcagattttggaacccaacattatgag
cagtgggccattcaaatggagaaaaaagctgctaaagatggaaatcgcaaagatcgcgtc
tgtgcagaacatttgaggaagtacaacgaagccctacaaatcaacgacacgatccgaatg
attgatgcgtatagccacctggagacattctacactgatgagaaagaaaagaagtttgca
gtcctcaacgacagcgatgtgagtgatgacgaggccagcagttgcaatgaccaacttaag
ggtgatgtaaagaaatctttgaaactggacgaaacggatgaatttctcatgaatttgttc
tttgataacaagaaaatgttgaaaaaactagctgaaaacccaaaatacgagaatgaaaaa
ctcattaaattaagaaacacgatactggaacaattcacaaggtctgaggagtcctcccga
ggaattattttcacaaaaacgcgacagagcacctacgcactttcccagtggatcatggaa
aatgcaaagtttgcagaagttggagtcaaagcgcatcacctgattggcgcggggcacagc
agtgaagtcaagcccatgactcagactgaacaaaaagaagtcattagtaaatttcgcact
ggggaaataaatctgcttatcgctacgacggtggccgaggaaggcctggatatcaaagag
tgcaacattgttatccgttatggccttgtcacgaacgagatagccatggtccaggcccgg
ggtcgagccagagctgatgagagcacgtacgtcctggtcaccagcagtggctcaggagtt
accgaacgggagattgttaatgatttccgagagaagatgatgtataaagctattaaccgt
gttcaaaatatgaaaccagaggagtatgcacataagattttggaattgcaggtgcaaagt
atcctggaaaagaaaatgaaagtcaaaagaagcattgcaaagcaatacaacaacaatcca
tcgttaataacacttctctgcaaaaattgtagcatgctggtctgctcgggagaaaacatc
catgtcattgagaagatgcatcatgtcaatatgacaccagaattcaagggactctacatt
gtaagagaaaacaaggcactgcaaaagaaatttgctgattatcagaccaatggagagatt
atctgcaagtgtggccaggcttggggaacaatgatggtgcacaaaggtttagatttgcct
tgtcttaaaataaggaattttgtagtcaatttcaaaaataactcaccgaagaaacagtac
aagaagtgggtggaattgcctatcagatttcccgatcttgactactcagaatactgcttg
tacagtgatgaagactag
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integrated database retrieval system
