Mus caroli (Ryukyu mouse): 110289546
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Entry
110289546 CDS
T05910
Symbol
Atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X2
KO
K17890
autophagy-related protein 16-1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04136
Autophagy - other
mcal04140
Autophagy - animal
mcal04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110289546 (Atg16l1)
04136 Autophagy - other
110289546 (Atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
110289546 (Atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mcal04131
]
110289546 (Atg16l1)
03029 Mitochondrial biogenesis [BR:
mcal03029
]
110289546 (Atg16l1)
Membrane trafficking [BR:
mcal04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
110289546 (Atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
110289546 (Atg16l1)
Mitochondrial biogenesis [BR:
mcal03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
110289546 (Atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
ATG16
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
DSE1_N
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_VPS8
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_NOL10_N
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_DCAF12
CFAP251_N
Beta-prop_ACSF4
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_NWD2_C
Tricorn_2nd
KASH_CCD
ASA1
Fez1
AcfD_4th
Motif
Other DBs
NCBI-GeneID:
110289546
NCBI-ProteinID:
XP_021011470
Ensembl:
MGP_CAROLIEiJ_G0014385
UniProt:
A0A6P5P577
LinkDB
All DBs
Position
1:80232338..80275696
Genome browser
AA seq
607 aa
AA seq
DB search
MSSGLRAADFPRWKRHIAEELRRRDRLQRQAFEEIILQYTKLLEKSDLHSVLTQKLQAEK
HDLPNRHEISPGHDGAWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQK
DKEIQMNEAKIAECLQTISDLETNCLDLRTKLQDLEVANQTLKDEYDALQITFTALEEKL
RKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI
EVIVDETSDHTEETSPVRAVSRAATKRLSQPAGGLLDSITNIFGRRSVSSIPVPQDVMDT
HPASGKDVRVPTTASYVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCEFKG
SLSGSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDN
ARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSES
VVREMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNAVKQTFSAPGFKCGSDWTRV
VFSPDGSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAPSGLHVVSVDKGSR
AVLWAQP
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgggcctgcgcgccgcagactttccccgctggaagcgtcacatcgcggaggaa
ctgaggcgccgggaccgactgcagaggcaggcgttcgaggagatcattctgcagtatacc
aagttgctggaaaagtcagatcttcattcagtattgacccagaaactacaagcagaaaag
catgacttgccaaataggcatgaaataagtcctggacacgatggtgcgtggaatgatagt
cagctacaagaaatggcccagttgaggatcaaacaccaggaagagctgactgaactgcac
aagaagcgtggggagttagctcagttggtgattgacctgaacaaccaaatgcagcagaag
gacaaggagatacagatgaatgaagcaaagattgcggagtgtttacagaccatctctgac
ctggagacaaactgcctggacctgcgcaccaaactgcaggacctcgaggtagccaaccag
accctgaaggatgagtatgacgccctgcagattacttttactgccctagaagagaaactg
aggaaaactactgaagagaaccaggaactggtcaccagatggatggctgagaaggcccaa
gaagccaatcgcctcaatgcagagaatgagaaggactccaggaggcgtcaagcacggctg
cagaaggagcttgcagaagcagccaaggaacctctccctgttgagcaggatgatgacatt
gaagtcattgtggatgagacctcagaccacacagaagagacctctcccgtccgagccgtc
agcagagcagctactaagcgactctcgcagcctgctggaggccttctggattctatcact
aatatctttgggagacgctctgtctcttccatcccagtcccccaggatgtcatggacact
catcctgcttctggtaaagatgtgagagtcccaactactgcctcgtatgtcttcgatgcg
catgatggagaggtcaatgcagtgcagttcagtccaggctcgcggttgctggccactgga
ggcatggaccgcagggtgaaactctgggaagcattcggagataaatgtgaatttaagggc
tccctgtctggtagtaatgctggaattacaagcattgaatttgatagtgctggagcttac
ctattagcggcttcaaatgattttgccagccgaatctggactgtggatgattatcgatta
cggcacacactcacaggccacagcgggaaagtcctctcagccaagttcctgctggacaat
gcacggattgtctcaggaagtcacgaccggaccctcaaactctgggatctccgcagcaaa
gtctgcataaaaacagtgtttgcaggatccagctgcaatgacattgtttgcactgaacaa
tgtgtaatgagtggacattttgacaagaaaattcgtttctgggatatccggtcagagagt
gtggtccgagagatggaactgttagggaagatcactgctctggacctaaaccctgagaga
actgagctcctgagctgctcccgtgatgacctgctaaaagtcattgacctccggaccaac
gcagtcaaacagactttcagtgcgcctggattcaaatgcggctctgactggacccgggtt
gtcttcagccctgatggcagttacgtggcagcaggctcagctgagggttctctttatgtc
tggagtgtgctgacagggaaagtggagaaggttctttcaaaacagcacagctcttctatc
aatgctgtggcgtgggccccctcgggcttacatgttgtcagtgtggacaaaggaagcaga
gctgtgctgtgggcacagccttga
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