Mus caroli (Ryukyu mouse): 110289620
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Entry
110289620 CDS
T05910
Symbol
Samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03250
Viral life cycle - HIV-1
mcal04623
Cytosolic DNA-sensing pathway
mcal05170
Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
110289620 (Samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
110289620 (Samhd1)
09160 Human Diseases
09172 Infectious disease: viral
05170 Human immunodeficiency virus 1 infection
110289620 (Samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcal03400
]
110289620 (Samhd1)
DNA repair and recombination proteins [BR:
mcal03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
110289620 (Samhd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_2
SAM_1
HD
SAM_Ste50p
PDEase_I
DUF4441
Motif
Other DBs
NCBI-GeneID:
110289620
NCBI-ProteinID:
XP_021011562
Ensembl:
MGP_CAROLIEiJ_G0024570
UniProt:
A0A6P5PBM4
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Position
2:complement(149057325..149096751)
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AA seq
658 aa
AA seq
DB search
MDLLLGCGVSAAAREPVPRYLTSQPRVSEVAMQSAPMEQPAKRPRCDGSPRTPPSTPPAT
ANLSADDDFQNSDLRTWDPEDVCSFLENRGFREKKVLDMFRENKITGSFLPFLDEDRLED
LGVSSLEERKKMIECIQQLSQSRIDLMKVFNDPIHGHIEFHPLLIRIIDTPQFQRLRYIK
QLGGGYYVFPGASHNRFEHSLGVGYLAGCLVRALAEKQPELQISERDMLCVQIAGLCHDL
GHGPFSHMFDGRFIPLARPDKKWKHEQGSIEMFEHLVNSNELKLVMKNYGLVPEEDITFI
KEQIMGPPLTPVKDSLWPYKGRPATKSFLYEIVANKRNGIDVDKWDYFARDCHHLGIQNN
FDYKRFIKFARICEVEYKVKEDKTYIRKVKHICSREKEVGNLYDMFHTRNCLHRRAYQHK
ISNLIDIMITDAFLKADPYVEITGTAGKKFRISTAIDDMEAFTKLTDNIFLEILHSADPQ
LSEAQSILRNIECRNLYKYLGETQPKGKKIRKEEYERLPQEVAKAKPENEPDVELKAEDF
IVDVINVDYGMKDKNPIDRVYFYCKSNSKQAVRINKEQVSQLLPEKFAEQLIRVYYKKKD
WKSLDAAGKHFVQWCALRDFTKPQDGDIIAPLITPLKWNNKTSSCLQEVSKVKTCLKF
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggacttgcttttggggtgtggtgtcagtgcggctgcgcgcgagccggtgccgcggtac
ttaacttcgcagccccgggtgtcggaggtagccatgcagagcgcacccatggagcagcca
gctaagcggccccgctgcgatggcagcccacggacgccaccgagcactcctcctgcaaca
gctaatctgtctgcagacgacgacttccaaaatagcgacctccgaacctgggatccggag
gacgtgtgctccttcttagagaatcgtggtttccgagagaagaaagtgctggacatgttc
agagaaaataaaatcaccggctcgttcctgccctttttggatgaggatcgtctggaagat
ctgggagtaagttccttggaggagaggaagaagatgatagaatgtatccagcagctgagt
cagtctcggattgatctaatgaaggtatttaatgatcccattcatggccacattgagttc
caccctctccttatcagaatcattgacacacctcaattccagcgacttcgctacatcaag
cagctggggggcggctactatgttttccctggagcatcccacaatcgctttgaacacagt
cttggagtggggtacctagcaggctgcctggtgcgagcacttgccgaaaaacagccagag
ctgcagatcagtgagcgagatatgctctgtgttcagattgcggggctctgccatgaccta
ggtcatgggccattttctcatatgtttgatggcagatttatcccacttgctcgcccggac
aaaaagtggaagcacgaacagggctccattgagatgtttgagcatctggttaattctaat
gaactcaaacttgtcatgaagaactatggtctcgtccctgaagaagatattacctttatc
aaggaacaaattatgggaccacctttaacaccagtcaaagattccttgtggccatataaa
ggacgccctgccacgaagagcttcctttacgagatagtggctaacaaaaggaatggcatc
gacgtagacaaatgggattattttgccagagactgtcaccatcttggaatccaaaataat
tttgattacaagcgcttcattaagtttgcccgtatctgtgaagtggagtacaaggtcaag
gaggacaagacctacatccgtaaggtgaagcacatttgttcgagagaaaaggaggttgga
aatctgtatgacatgttccacactcgcaactgcttacaccgaagagcttaccaacacaaa
atcagcaacctcatcgacataatgattacagatgctttcctcaaagcagacccctacgtg
gagattacagggactgccgggaagaagttccgcatttccacagccattgatgacatggaa
gccttcactaagttgacggataacattttcctggagattttacactctgctgatccacag
ttgtctgaggcccaaagtattttaaggaacattgaatgccgcaatctatacaagtatttg
ggtgagacccagccgaagggtaagaagattaggaaggaagaatatgaacggcttccccaa
gaagttgctaaagccaaacctgaaaatgagccagatgttgaactgaaagccgaagatttc
atagttgatgttatcaatgtggattatgggatgaaagacaagaatccaattgatcgtgtt
tacttctattgtaagagcaacagcaagcaagcggtcaggatcaataaagagcaggtgtca
caactgctgccagagaaatttgcagagcagctcattcgggtgtactataagaagaaagac
tggaagagcctggatgccgccgggaagcactttgttcagtggtgtgcgctcagggacttc
accaagccacaggatggtgacattatagctccactcataacacctctgaaatggaataat
aagacttcatcttgcctccaagaagtatccaaagtaaaaacgtgtctaaaattttaa
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