Mus caroli (Ryukyu mouse): 110289687
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Entry
110289687 CDS
T05910
Symbol
Pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03015
mRNA surveillance pathway
mcal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110289687 (Pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
110289687 (Pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110289687 (Pabpc1l)
03041 Spliceosome [BR:
mcal03041
]
110289687 (Pabpc1l)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110289687 (Pabpc1l)
mRNA cycle factors
Stress granule specific factors
110289687 (Pabpc1l)
Spliceosome [BR:
mcal03041
]
Complex C
Other components
Complex C specific factors
110289687 (Pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RBD_DEAH11
RRM_Nup35
RRM_occluded
SET_assoc
RRM_3
RRM_PARP14_3
xRRM
E2R135
Motif
Other DBs
NCBI-GeneID:
110289687
NCBI-ProteinID:
XP_021011679
Ensembl:
MGP_CAROLIEiJ_G0024627
UniProt:
A0A6P5PBV1
LinkDB
All DBs
Position
2:155851936..155878237
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AA seq
607 aa
AA seq
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MDTGGHGCSLSSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFS
TFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKRE
AELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEK
HEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKN
LDDSINDERLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYRRRPSHPVLSSFQQPTSYLLPAVPQSTAQAVYYSSGSI
TPMQPDPRWTAQPHGPPSTCPPAASVVQPLSTTQHPCIHLSGASQVSSQVPHTQRVVNIG
TQTTGPGGEGSSIPGQLLVPHRGTSAVHSAHGVQESAVYVPGHQPLTVSMLAAAPLHEQK
QMIGERLYSLIHDAYAPLTGKITGMLLELDNLELLLLLESPESLHAKIEEAVAVLQVHRE
MESADRN
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggtggccatggctgctcactctcctcgctttatgtgggcgatctgcacccc
gacgtgactgaatctatgctctatgagatgttctccccgatcggcaatatcctttccatc
cgcgtgtgtcgggatgtggctacccggcgctctctgggctatgcctacatcaatttccag
cagcctgctgacgcggaacgggcactagacacaatgaactttgaggtgatcaaaggccaa
cccatccgaatcatgtggtctcaccgagatccaggtcttcggaagtctggtatgggcaac
atctttatcaaaaacttggagaattccatcgacaacaaggctctgtatgacaccttctct
acttttgggagcattctctcttctaaggtcgtatacaatgaacatggatcgcggggtttt
ggctttgtgcattttgagacccatgaggctgcccagaaggccatcaacaccatgaatggg
atgttgctgaacgaccggaaagtctttgtaggccatttcaagtctcgacagaagcgggag
gcagagctgggggctcgggccctcgggttcaccaacatctatgtgaagaacctgcacgcg
aacgtggacgagcagaggctccaggacctcttctcccagtttggaaatatgcagagtgtg
aaggtgatgagagacagcaatgggcaatcccggggcttcggcttcgtcaactttgagaag
catgaggaagcccagaaggcagtggaccacatgaatgggaaggaggtgagcgggcagctg
ctctatgtgggtcgggcccagaagcgggcagaacggcagagcgagctgaagcgcaggttt
gaacaaatgaagcaggagaggcagaaccgctaccagggtgtgaacctttatgtgaagaac
ctggacgactccattaacgatgagaggctgaaggaagttttctctacctatggagtgatc
accagcgctaaggtgatgacagaaagtagccacagcaagggctttggctttgtgtgcttt
tcctctccagaagaggcaacgaaggctgtgacggagatgaacgggcgcatcgtgggcacg
aaaccgctatatgtggccctggcacagcgcaaggaggagcggaaggccatcttgaccaac
cagtataggcgacgcccctctcaccctgtcttgagctccttccagcagcctaccagctac
ctgctccctgctgtaccccagtctacagcccaggctgtgtactacagttctggctccata
actccaatgcaaccagaccccaggtggacggcccagccacatggacctccatctacttgc
cctccagctgcctccgtggtccagcctctaagcacgacgcagcatccctgtatccacctg
agcggtgccagccaggtctccagccaggtgcctcacacgcagagagtagtcaacattggt
acccagactacaggaccaggtggggagggatcctctatcccaggtcagcttctcgtgcca
catagaggaacctcagctgtacacagtgcccatggggtccaggagtcggccgtgtatgtc
cctggccatcagcctctgactgtgtccatgctggccgctgcacccctgcacgagcaaaag
cagatgattggggagcgtctctactccctcatccacgatgcctacgccccactgactggc
aagatcacgggcatgctgctggagctggacaacctggagcttctgttattgctggagtcc
ccagagtccctccatgccaagatagaagaggcggtggcagtactgcaggtgcatcgagaa
atggagtcagcagataggaactga
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