Mus caroli (Ryukyu mouse): 110289729
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Entry
110289729 CDS
T05910
Symbol
Ctcfl
Name
(RefSeq) transcriptional repressor CTCFL isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcal03000
]
110289729 (Ctcfl)
03036 Chromosome and associated proteins [BR:
mcal03036
]
110289729 (Ctcfl)
Transcription factors [BR:
mcal03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
110289729 (Ctcfl)
Chromosome and associated proteins [BR:
mcal03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
110289729 (Ctcfl)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_15
zf-C2H2_ZN142
Zf-C2H2_ZNF451
zf-C2H2_7
Zf-C2H2_ZNF451_C
zf-C2H2_jaz
zf-C2H2_7th_ZNF462
zf-met
Motif
Other DBs
NCBI-GeneID:
110289729
NCBI-ProteinID:
XP_021011745
Ensembl:
MGP_CAROLIEiJ_G0024746
UniProt:
A0A6P5P9R9
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All DBs
Position
2:complement(165042471..165064951)
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AA seq
645 aa
AA seq
DB search
MAAAEVPVPSGHFTQIKEQKLKPGDLEEEKEEDGVQRVDAQEGAVEEVETENSCLLLEAR
APVESDRRILTLQTMHLESQDVHLQGLGWLSVPHSDELSGTVPEAEGILQLPSVLWLDPE
PQLNLQHCVTVSIPEELYPPEELELIHFHLLRENVLMAEENQELTPDLDESTALKKPEED
EKDQLPPQGETDKKEERFLLLEMKPKEGKDEIVLTISHLSLEEQQDPPAAEQTSVPRAKA
AKPKARRQTKGKPQTFQCDTCPFTSSKLSTFNRHIKIHSNERPHLCHLCLKAFRTVTLLR
NHVNTHTGTRPHKCRDCDMAFVTSGELVRHRRYKHTYEKPFKCSLCKYASVEASKMKRHI
RSHTGERPFQCCQCAYASRDSYKLKRHMRTHSGEKPYECPTCHVRFTQRGTMKIHMAQKH
GENVPKYECPHCATIIARKNDLRVHLRNLHSHSPEEMKCRYCPAGFHERYALIQHQRTHK
NEKKFKCKQCDYACKQERCLKAHMRMHTGEKPFSCLACNKHFQQKQLLTVHLRKYHDPNF
VPNLHLCLKCDKRFSRWSNLQRHRKKCDPEHETLAPNKDRRPVTRTQASEGEAGHEEDVA
TLESATSGEPQCPGEQALGHQGEAAGSQSPDQGLTCEMIFNMMDK
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgctgaggtccctgtcccttctgggcacttcacccagatcaaagagcagaag
ttgaagcctggagacctagaggaggagaaagaggaggacggggtacaaagagtggacgcc
caggagggagctgtcgaggaggtggagaccgagaacagctgtctgcttctggaggccagg
gccccggtggagagcgataggcggatcctgaccctgcaaaccatgcacctggagtcccag
gatgtgcacctacaggggctgggatggctgagcgtgccacactccgacgagctttcaggg
acggtaccagaggcggaaggcatactgcagttgccatccgtgctgtggctcgacccagag
ccccagctcaaccttcagcattgtgtgacggtcagcatcccggaagagctgtacccacca
gaggagctggagctgatacattttcacctgctgagagagaacgtgctaatggccgaggag
aaccaagagttaacaccagacttggacgaaagcacagccctgaagaagcccgaagaagat
gaaaaggaccagctcccaccccagggagagacagacaagaaagaagagagattcctcctt
ctggaaatgaaaccaaaagagggaaaagacgaaattgttctgaccatttcccatctaagc
ctagaagaacagcaagatccaccagcggcagagcagacaagtgtgccgagagccaaagcc
gcaaaaccaaaagcgcggaggcagaccaagggaaaacctcagacctttcagtgcgacacc
tgcccgttcacttcttccaagctctcaactttcaatcgtcacatcaaaattcacagcaat
gagaggccacacctgtgtcacctgtgcctgaaggccttccggaccgtcactcttcttagg
aaccatgtgaacacccacacaggaaccaggccccacaagtgcagggactgcgacatggcg
tttgtcaccagcggagaactcgtccggcaccggcgttacaaacacacttatgagaagccc
ttcaagtgctccctgtgcaagtacgccagcgttgaggcaagcaagatgaagcgtcacatc
cgctcacacacaggtgagcgtcccttccagtgctgccagtgtgcttacgccagcagggac
tcctacaagctgaagcgccacatgaggacacactcaggtgagaagccgtatgaatgcccc
acctgtcacgtccggttcacccagagagggaccatgaaaatccatatggcacagaagcac
ggagagaatgtgcccaaatacgagtgtccccactgtgccaccatcatcgcgaggaagaat
gacctgcgtgtccatctgcgtaacctgcacagccatagcccagaggagatgaagtgccga
tactgtcccgccggcttccatgagcgctatgccctcattcagcaccagaggacccacaag
aacgagaagaagttcaagtgcaagcagtgcgattacgcgtgcaagcaggagcgatgcttg
aaggcacacatgcgcatgcacacaggagagaagcccttctcctgcctggcctgcaacaag
cacttccaacagaagcaactactgactgtgcacctgaggaagtaccatgacccgaacttc
gtccccaatctgcacctgtgcctcaagtgtgataaacgtttctcccgctggagtaacctg
cagagacacagaaagaagtgtgacccggagcatgagacgttggcccccaacaaggacagg
agaccagtgacaaggacacaggcctcggagggagaagcaggacacgaggaagatgttgcc
accctggagagcgccacctcaggggagcctcagtgccctggggagcaggctctgggccac
caaggagaagcagcggggagccagagcccagatcaaggccttacctgcgagatgatcttt
aacatgatggataagtga
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integrated database retrieval system
