Mus caroli (Ryukyu mouse): 110290697
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Entry
110290697 CDS
T05910
Symbol
Col9a1
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04151
PI3K-Akt signaling pathway
mcal04510
Focal adhesion
mcal04512
ECM-receptor interaction
mcal04820
Cytoskeleton in muscle cells
mcal04974
Protein digestion and absorption
mcal05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
110290697 (Col9a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110290697 (Col9a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110290697 (Col9a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
110290697 (Col9a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
110290697 (Col9a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
110290697 (Col9a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
mcal00535
]
110290697 (Col9a1)
Proteoglycans [BR:
mcal00535
]
Extracellular matrix (ECM) proteoglycans
Others
110290697 (Col9a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
110290697
NCBI-ProteinID:
XP_021012989
Ensembl:
MGP_CAROLIEiJ_G0013999
UniProt:
A0A6P5PIE2
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Position
1:19648602..19724593
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AA seq
921 aa
AA seq
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MKNFWKIPVFFCVCSFLGPWVSATLKRRARFPANSISNGGSELCPKIRIGQDDLPGFDLI
SQFQIEKAASRRTIQRVVGSTALQVAYKLGSNVDFRIPTRHLYPSGLPEEYSFLTTFRMT
GSTLEKHWNIWQIQDSSGREQVGVKINGQTKSVAFSYKGLDGSLQTAAFLNLPSLFDSRW
HKLMIGVERTSATLFIDCIRIESLPIKPRGQIDADGFAVLGKLVDNPQVSVPFELQWMLI
HCDPLRPRRETCHELPVRITTSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
PGPPGPPGDPGKPGAPGKPGTPGADGLTGPDGSPGSVGPRGQKGEPGVPGSRGFPGRGIP
GPPGPPGTTGLPGELGRVGPIGDPGKRGPPGPPGPPGPSGTIGFHDGDPLCPNSCPPGRS
GYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGPQGLRGITGIVGDK
GEKGARGFDGEPGPQGIPGAAGDQGQRGPPGETGPKGDRGIQGSRGIPGSPGPKGDTGLP
GVDGRDGIPGMPGTKGEAGKPGPPGDVGLQGLPGVPGIPGAKGVAGEKGNTGAPGKPGQL
GSSGKPGQQGPPGEVGPRGPRGLPGSRGPVGPEGSPGIPGKLGSVGSPGLPGLPGPPGLP
GMKGDRGVFGEPGPKGEQGASGEEGEAGARGDLGDMGQPGPKGSVGNPGEPGLRGPEGIR
GLPGLEGPRGPPGPRGVQGEQGATGLPGIQGPPGRAPTDQHIKQVCMRVVQEHFAEMAAS
LKRPDTGASGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEK
GERGPPGRGPKGLPGAIGLPGDPGPASYGKNGRDGEQGPPGVAGIPGVPGPPGPPGPPGF
CEPASCTLQSGQRAFSKGPDK
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacttctggaaaatcccagttttcttctgtgtgtgcagttttctgggaccctgg
gtatctgcaactcttaagcgtcgcgcaagatttcctgccaattccatttctaatggtgga
agtgaactgtgtcccaagatcaggattggccaagatgacttaccagggtttgacctgatt
tctcagttccaaattgagaaggctgcatctcgaaggactatccagagggtggtgggatcc
acagccttacaagtggcttacaagctgggaagtaatgtagacttcaggattccaacaagg
catttgtatcccagtggactgcctgaagaatattcctttttaactactttccggatgact
ggaagcacactcgaaaagcactggaacatttggcagatccaggattcctcagggagggag
caagttggcgtgaagataaatggccaaacaaagtctgtcgcattttcatataagggactg
gatgggagtctccaaacggccgccttcttgaatttgccgtccttgtttgactcccggtgg
cataagctcatgattggcgtggaaagaacaagcgccactctttttattgactgcatcagg
atcgaatccttacctataaagccaagaggccagattgatgcggatggctttgcagtgctg
ggaaaacttgtggacaatcctcaggtttctgttccttttgaactccagtggatgctgatt
cactgtgaccccctgagacccaggagagaaacctgtcatgagctgccagtcagaatcaca
accagccagaccaccgatgagagaggtcctcctggtgagcaggggcctccagggcctccc
gggcctcctggagttccgggcatagatggcattgatggtgaccgaggtccaaagggtccc
ccaggacctccgggtcctcctggagacccaggcaagccaggagcaccaggcaagccaggc
acaccaggagctgatggattaacaggacctgatggatcccctggctctgttggaccaagg
ggacaaaaaggagaacctggtgtacctgggtctcgtggatttccaggccgtggtattcca
ggaccccctggtcctcctgggaccacaggacttcctggagaacttggccgagtaggccct
attggcgaccctgggaaaagaggaccacctggccctcctggccccccaggacccagtgga
acaattggatttcatgatggagacccattgtgccccaattcctgcccaccaggtcgctct
ggatatccaggcctaccaggcatgaggggccataaaggggcgaaaggagaaatcggcgag
ccaggaagacaaggacacaagggtgaagagggtgaccagggggaactgggagaagttggc
gctcaaggacctccaggacctcagggtctgagaggcatcactggcatagttggagacaaa
ggagaaaagggtgctcggggatttgatggagagcctggacctcagggcattccaggtgca
gctggtgatcaaggacagcgaggccctccaggagaaacaggtcctaagggagacagaggc
attcaaggttcccgaggaattcctggatccccggggccaaaaggagacacgggcttgcca
ggtgtagatggccgagatggaataccaggaatgcctgggacaaagggtgaagcagggaag
cctggaccccccggggacgtgggattgcagggcttaccaggcgtccctggaatccctggt
gcaaaaggtgttgctggtgaaaagggtaacacgggtgctccagggaagcccggtcagttg
ggaagttcaggaaaaccaggccaacaagggcccccaggagaggttggacctcggggaccc
aggggccttccaggcagtcgaggcccagtaggaccagaagggtctccaggcataccaggg
aaactgggatctgttggcagccctggccttcctggcttgcctgggccccctggacttcct
ggaatgaaaggagacaggggtgtattcggtgaaccgggtcccaagggtgaacagggtgcc
tctggtgaagaaggcgaagcaggagcaaggggtgaccttggagatatgggacaacctggc
ccaaagggatctgtgggtaaccccggggagccaggtctgagggggcctgaaggaatcaga
gggcttcctggactggaaggaccaagaggaccgcctggaccccggggtgtgcagggagaa
cagggtgccactgggctgcctggtatccagggccctccgggcagagcgccgaccgaccag
cacatcaagcaggtttgcatgagagtcgtgcaagagcattttgcggaaatggcagccagc
ctcaagagaccagacacaggagcctctggtcttcctgggagacctggtcctcctgggcct
ccgggcccccctggagagaacggtttccctggtcagatgggaatccgtggtctcccaggc
attaagggtccccctggtgctcttggcttaagaggacctaaaggtgacttgggagaaaaa
ggagaacgtggtcctccaggaagaggtcctaagggtttgcctggagcgataggtctccca
ggtgacccaggccctgccagctatgggaaaaatggccgtgatggagagcaaggtcccccg
ggagtggcaggaattcctggtgtgcctggacccccaggtcctccaggccctcctgggttc
tgtgagccagcctcttgtactctgcagtctggtcaaagagcatttagcaaagggccggac
aagtga
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