Mus caroli (Ryukyu mouse): 110291617
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Entry
110291617 CDS
T05910
Symbol
Ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcal03041
]
110291617 (Ddx20)
Enzymes [BR:
mcal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110291617 (Ddx20)
Spliceosome [BR:
mcal03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
110291617 (Ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-GeneID:
110291617
NCBI-ProteinID:
XP_021014504
Ensembl:
MGP_CAROLIEiJ_G0025474
UniProt:
A0A6P5PBC6
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Position
3:complement(99705888..99714884)
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AA seq
825 aa
AA seq
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MAAAAFEAPAALTTSESTMAAERAAAPVQAAEPTPASPWTQRTAHDIGGPRTRTGDVVLA
EPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTI
ALDSLILENYSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK
KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQM
LAVSATYPEVLANALTRYMRDPTFVRLNPSDPSLIGLKQYYQVVNSYPLAHKIFEEKTQH
LQELFSKVPFNQALVFSNLHSRAQHLADILSSKGFPTECISGNMNQNQRLDAMAKLKQFH
CRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEE
NMMMKIAQKCNINLLPLPDPIPPGLMEECLNWDVEVKAAMHTYSSPTIATQSPKKQVQKL
ERAFQSQRTPGNQMPSPRNTSVSALSARSKHSKQKLPVKSHSECGVLEKAALPQELGCPT
QLEEQVKNSVQTSVEDSSSNSQHQAKDTSPGSLPKIPCLSSFKVHQPSTLTFAELVEDYE
HYIKEGLEKPVEIIRHYTGPEAQTGNPQNGFVRNRVSEDRAQMLVSSSQSGDSESDSDSC
SSRTSSQSKGNKSYLEGSSDTQLKDSECTPVGGPLSLEQVQNGHDTLTQVEYQEAPETQV
KARHKEGANQRSKQSRRNPPRRSSYRVQTEPQEESWYDCHRETTASFSDTYQDYEEYWRA
YYRAWQEYYAAASHSYYWNAQRHPSWMAAYHMNTVYLQEMMRGNQ
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcgtttgaagccccggcggccttgacaacctccgagtccactatggct
gcggagcgtgcggccgcgccggtgcaggctgcggagccgactccggcctccccgtggacc
cagcggaccgcacacgacatcggcgggccgcgcacacgtaccggggacgtggtgctggca
gagcccgcggacttcgagtcgctgctgctgtcgcgaccggtgctggagggtctgcgggcg
gccggcttcgagagaccctctccggtgcagctcaaggccatcccgttggggcgctgcggg
ctcgatttaattgtccaagctaagtctggcactggaaaaacttgtgtattctccaccatt
gctctggactctctgattcttgaaaactatagtactcagattttgatattggctcccaca
agagaaattgctgttcagatacactcggttatcacagccattggaataaaaatggaagga
ttagaatgtcatgtctttattggagggactccattatcacaagacaaaaccagacttaaa
aagtgtcatattgctgttggatctcctggtagaattaaacagctcatagaacttgactac
ctgaatccgggcagtatccgtctctttattcttgatgaagcagataagcttttagaagaa
ggcagtttccaggagcaaataaattggatttactcctctttacctgcgagtaagcagatg
ttggcagtatctgctacttaccctgaagttttggctaatgctttgacaaggtatatgaga
gatcccacttttgtaagattgaatcccagcgatccaagtctcataggtttgaagcagtac
taccaagttgtcaattcttaccctttggctcataagatttttgaggaaaagactcagcac
ttacaggaactttttagtaaagtcccatttaatcaagccttggtgttttctaatttgcat
agcagagctcaacatttggctgatattctttcttctaaaggttttcctactgaatgcatt
tcaggtaacatgaatcagaatcagcgccttgatgctatggctaaactgaaacagtttcat
tgcagagtcctcatttctacagacctgacttcccgtgggattgacgcagagaaggtgaat
ctagttgtaaatcttgatgtgccgttagactgggagacttacatgcatcggattggcaga
gccggccgttttggtacattgggactgacagtgacctactgttgtagaggagaagaagaa
aatatgatgatgaaaattgctcagaaatgtaatatcaaccttcttcctttaccagatcct
attcctcctggcctgatggaagaatgcttgaattgggatgtggaagttaaagctgccatg
catacttacagctcaccaactatagctactcagtcccccaaaaagcaagttcaaaaacta
gagagagccttccagtctcaaagaacgcctgggaaccaaatgccttcccctagaaatact
tctgtatctgcactatcagccagatcaaagcacagcaaacaaaagcttccagtgaaaagc
cactcagagtgtggagtcctagaaaaggcagctctaccacaagagttgggctgtcccaca
cagctggaagagcaagtgaagaattctgttcagacctctgttgaggactcctccagtaac
agccagcatcaggccaaagatacctcacctgggtcactccctaaaattccttgtctgtct
tcttttaaagtccatcagccgtctactttgacttttgcagaactggtagaagattatgag
cactatattaaagaggggttagagaaacctgtggaaattatccggcactacacagggcct
gaggcccagaccgggaatcctcagaatggctttgtgagaaatagagtttctgaagataga
gcacagatgttggtgagtagtagccagtctggagactcagagagtgacagcgattcttgc
agctcaaggacttcttcccagagcaaaggtaataagtcttacttggaaggctcctcagac
actcagttgaaagactctgaatgtactcctgtgggtggccctctctctttggaacaagtt
cagaatgggcatgataccctgactcaagtggagtatcaagaagcccctgaaacccaggta
aaggcaaggcataaagagggcgctaaccaaaggtctaagcaaagtcggagaaacccacca
cggcgttcttcttaccgagtacagacagaaccccaggaagagagttggtatgactgtcac
agggaaacaactgcaagtttttctgatacttaccaggattatgaggagtactggagagca
tattacagggcatggcaagagtattatgctgctgcttcccattcatactattggaatgct
cagagacatccaagctggatggctgcctatcatatgaacacagtttatctacaagagatg
atgcgtggtaaccaatga
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