KEGG   Mus caroli (Ryukyu mouse): 110292227
Entry
110292227         CDS       T05910                                 
Symbol
Rbbp4
Name
(RefSeq) histone-binding protein RBBP4
  KO
K10752  histone-binding protein RBBP4
Organism
mcal  Mus caroli (Ryukyu mouse)
Pathway
mcal03082  ATP-dependent chromatin remodeling
mcal03083  Polycomb repressive complex
mcal04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    110292227 (Rbbp4)
   03083 Polycomb repressive complex
    110292227 (Rbbp4)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    110292227 (Rbbp4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mcal03036]
    110292227 (Rbbp4)
Chromosome and associated proteins [BR:mcal03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     110292227 (Rbbp4)
  Histone modification proteins
   HAT complexes
    HATB complex
     110292227 (Rbbp4)
   HDAC complexes
    Sin3A-HDAC complex
     110292227 (Rbbp4)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     110292227 (Rbbp4)
    PRC2.2
     110292227 (Rbbp4)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     110292227 (Rbbp4)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    110292227 (Rbbp4)
  Chromatin remodeling factors
   NuRD complex
    110292227 (Rbbp4)
   NuRF complex
    110292227 (Rbbp4)
   NuRF complex (fruit fly)
    110292227 (Rbbp4)
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD_LRWD1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st WD40_RFWD3 ANAPC4_WD40 Beta-prop_DCAF12 WD40_MABP1-WDR62_1st Beta-prop_RIG_1st eIF2A MIOS_WD40 Beta-prop_SPT8 NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 110292227
NCBI-ProteinID: XP_021015068
Ensembl: MGP_CAROLIEiJ_G0026516
UniProt: A0A6P5PNB9
LinkDB
Position
4:complement(119113516..119140132)
AA seq 425 aa
MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDP
EGQGS
NT seq 1278 nt   +upstreamnt  +downstreamnt
atggctgacaaggaagcggcctttgacgacgcagtggaagaacgggtgatcaacgaggag
tacaaaatatggaagaagaacaccccttttctttatgatttggtgatgacccatgccctg
gagtggcccagcttaactgcccagtggcttccagatgtgaccaggcctgaagggaaagat
ttcagcattcatcggcttgtcctgggaacacacacatctgatgaacaaaaccacctggtg
atcgccagtgtccagctccctaatgatgatgctcagtttgatgcatcccattatgacagt
gaaaaaggagaatttggaggttttggttctgtcagtgggaaaattgaaatagaaatcaag
atcaaccatgaaggagaagtgaacagggcccggtacatgcctcagaacccctgcatcatt
gcaacaaagactccatccagtgatgttcttgtttttgactacacaaagcacccttctaaa
ccagacccttctggagaatgcaaccccgacttgcgtctccgtggacatcagaaggaaggt
tatgggctttcttggaatccaaatctcagtgggcacttacttagtgcttcagatgaccat
accatctgcctgtgggacatcagtgcagttccaaaagaaggaaaggtggtggatgcaaag
accatcttcacggggcacacagcagtagtggaggacgtgtcctggcatctgctccacgag
tctctgtttgggtccgttgctgatgaccagaagcttatgatttgggacactcgttcaaac
aatacttccaagccaagccactcggttgatgctcacacagctgaagtgaattgcttatct
ttcaatccttatagtgagttcattcttgccacaggatcggctgacaagactgttgccttg
tgggatctgaggaatctgaaactcaagttgcactcctttgaatcccataaggatgaaata
ttccaagttcagtggtcgcctcacaatgagactatcttagcttccagtggtactgatcgg
aggctgaatgtctgggatctaagtaaaattggagaagagcagtccccagaagatgcagag
gatggcccaccagaattgttgtttattcatggtggtcacactgccaagatatctgacttc
tcctggaatcccaatgaaccttgggtgatttgttctgtatcagaagacaatatcatgcaa
gtgtggcagatggcggagaacatttacaatgatgaagatcctgaaggaagtgtggatcca
gagggacaaggatcctag

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