Mus caroli (Ryukyu mouse): 110292299
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Entry
110292299 CDS
T05910
Symbol
Srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03013
Nucleocytoplasmic transport
mcal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110292299 (Srrm1)
03015 mRNA surveillance pathway
110292299 (Srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110292299 (Srrm1)
03041 Spliceosome [BR:
mcal03041
]
110292299 (Srrm1)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110292299 (Srrm1)
Spliceosome [BR:
mcal03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
110292299 (Srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
110292299
NCBI-ProteinID:
XP_021015206
Ensembl:
MGP_CAROLIEiJ_G0026636
UniProt:
A0A6P5PNM1
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All DBs
Position
4:complement(124992397..125024767)
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AA seq
923 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL
GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIP
SAFLELKKEEIKQRQIEQEKLASLKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSP
SPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKSPELPEPSVRMKDSSVQEATS
TSDILKAPKPEPVPEPKEPSPEKNSKKEKEKTRPRSRSRSKSRSRSRSRSPSHTRPRRRH
RSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSS
SSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNR
TRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGSKMAAADSVQQR
RQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSP
RMQMGKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPPRRRRSPTPPPRRRT
PSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPP
KQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRR
GASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAK
KPPAPPSPVQSQSPSTNWSPAVPAKKAKSPTPSPSPARNSDQEGGGKKKKKKKDKKHKKD
KKHKKHKKHKKEKAVAVATPAPAAPAAVSAATTTSAQEEPAAAPEPRKETESEAEDDNLD
DLERHLREKALRSMRKAQVSPQS
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggaacaagtgcggagcaggataatcggttcagcaacaaa
cagaagaaactcctcaagcagctgaaatttgcagaatgcctagaaaaaaaggtggacatg
agcaaagtaaatttggaggttataaagccttggataaccaaaagagtaactgagatcctt
ggattcgaagatgatgttgtcattgagtttatattcaaccagctggaagtgaagaaccca
gattccaaaatgatgcaaatcaacctgactggatttttgaatgggaagaatgctagagaa
ttcatgggagaactgtggcccctgctgctaagtgcgcaagaaaatatcgccggaatccct
tctgctttcctagagttgaagaaggaagagataaagcagagacaaattgaacaagaaaaa
ttggcgtctctgaaaaaacaagatgaagataaagataagagggataaggaagaaaaggaa
agcagcagagagaagagggagcggtctcgcagcccaagaagacgcaaatccagatctcct
tcccctagaagacgatcttcccctgtcaggagagagagaaagcgcagtcactctcgatct
ccccgtcacagaaccaagagccggagcccttcccctgccccagaaaagaaggagaaatct
ccagagctcccagagccatccgtgaggatgaaggactcctcagtacaggaggccacctct
acaagtgacatcttgaaagctcccaagcctgagcctgtaccagagcccaaagaaccgtct
ccagaaaaaaattccaaaaaggaaaaggaaaagactcgaccaagatctcggtcacgttcc
aaatcacggtctcggagccgatctcgatcaccttctcatactagaccaagacggagacat
agatcccgatcaagatcatactctcctagaaggcggccaagcccaagacgacgaccatct
ccccgaagaagaacgccaccaagacggatgcctcctccaccaaggcaccggaggagtagg
tctccagggagacgaaggaggcgttcttccgcatccctgtctggaagtagctcgtcgtcc
tcttcatctcgttcccggtcaccaccaaagaagcctcccaagaggacatccagccctcct
cggaaaacgcgtaggttatcaccttcagcaagtcctccacggcgaaggcaccggccgtca
tctccagcaactccaccacccaaaactcgccattccccaactccccagcagtcaaaccgt
acaagaaaaagtcgtgtttctgtgtctccaggaagaacctctggtaaagtgacaaaacat
aaaggtactgagaagagagagtcaccttctccagcgcccaagcctagaaaagtggagctg
tctgagtctgaagaagacaaaggcagcaaaatggctgcagctgattctgtgcagcagaga
agacaataccgacggcagaaccagcagtcttcatctgactctggctcctcttccacctca
gaagatgagcggcccaagagatcccatgtaaagaacggtgaggtaggcaggcggcggaga
cattccccttctcggagtgcctctccatcacctcgaaagcgccaaaaagagacttcccct
cggatgcagatgggaaagcgatggcagtcaccagtgactaaaagtagtagaaggaggaga
agtccctccccgcctcctgccagaaggcgacggtctccttctccagccccgccgccgcca
cctccccctcctcctcctcggcggcgcagatctcccactccaccaccacgacgaaggacc
ccttctcctcccccacgccgccgctcaccgtctccaagaagatactctcctcccattcag
aggagatattctccttccccccctccaaagaggagaaccgcctcccccccacccccgccc
aagcgaagggcatcaccatctccaccaccaaagcgccgggtctcccactctccgcctcct
aaacaaagaagccccccagtcaccaagagacgctcgccctccttatcttcaaaacatagg
aaagggtcttccccaggccgatccacccgggaggctcgctcaccacaaccaaacaaacgg
cattcgccctcaccacggcctcgggctcctcagacctcaagccctccccctgtacgaaga
ggagcttcagcgtcaccccaaggaaggcagtccccatctccaagtactaggcctattagg
agagtctccaggaccccggagcccaaaaagataaaaaaggcggcctcaccaagccctcag
tccgtaagaagggtttcatcttccagatctgtctctggatctcctgagccagcagctaaa
aagcctccagcacctccctctcctgtgcagtctcagtcaccctccacaaactggtcgcct
gcagtaccagccaaaaaggctaagagcccaacaccaagcccgtcccctgcccggaattct
gatcaggaaggaggtgggaagaaaaagaagaagaagaaggacaagaaacacaagaaggat
aagaaacacaagaagcacaaaaaacacaagaaggagaaggctgtggccgtagccacccca
gctcctgcagcccctgcagctgtttctgctgccaccaccacatcagcacaggaagagcct
gcagcagcaccagagcccaggaaggagactgagagtgaagctgaagacgacaaccttgat
gacttagagaggcacctacgggagaaggccctgcgatccatgcggaaggctcaagtgtcc
ccacagtcctaa
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