Mus caroli (Ryukyu mouse): 110292304
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Entry
110292304 CDS
T05910
Symbol
Ncbp1
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03013
Nucleocytoplasmic transport
mcal03015
mRNA surveillance pathway
mcal03040
Spliceosome
mcal05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110292304 (Ncbp1)
09122 Translation
03013 Nucleocytoplasmic transport
110292304 (Ncbp1)
03015 mRNA surveillance pathway
110292304 (Ncbp1)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
110292304 (Ncbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110292304 (Ncbp1)
03041 Spliceosome [BR:
mcal03041
]
110292304 (Ncbp1)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
110292304 (Ncbp1)
Spliceosome [BR:
mcal03041
]
Common components
Common spliceosomal components
Cap binding complex
110292304 (Ncbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G
MIF4G_like
DUF1690
Cob_adeno_trans
Motif
Other DBs
NCBI-GeneID:
110292304
NCBI-ProteinID:
XP_021015223
Ensembl:
MGP_CAROLIEiJ_G0025982
UniProt:
A0A6P5PNN7
LinkDB
All DBs
Position
4:40201643..40235745
Genome browser
AA seq
790 aa
AA seq
DB search
MSRRRHSYENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEAD
LPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANN
YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWV
GKELYEKKDAEMDRIFSTTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEG
PVMPGSHSVERFVIEENLHCIIKSYWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELF
QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMSTTCVDRFINWFSHH
LSNFQFRWSWEDWSDCLTQDLESPKPKFVREVLEKCMRLSYHQHILDIVPPTFSALCPAN
PTCIYKYGDESSNSLPGHSVALCLSVAFKSKATNDEIFSILKDVPNPNQVDDDDEGFRFN
PLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDKGKLHVLRVMFEVWRNHPQM
IAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELE
EAKEKLARQHKRRSDDDDRSSDRKDGALEEQIERLQEKVEAAQSEQKNLFLVIFQRFIMI
LTEHLVRCETDGTSILTPWYKNCIERLQQIFLQHHQTIQQYMVTLENLLFTAELDPHILA
VFQQFCALQA
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggaggcggcacagctacgagaacgatggtggacaacctcacaaaaggaggaag
acgtctgatgcaaatgaaactgaagatcatttggaatctttaatatgcaaagtaggggaa
aagagtgcctgctctttagagagcaatctcgaaggcctggctggtgttttagaagctgat
cttcctaactacaagagcaagatcttaaggctcctttgtacagttgcacgtctgttacct
gagaagctaacaatttatacaacattagttggactgctgaatgccagaaattacaacttt
ggaggagaatttgtagaagctatgattcgtcaacttaaagaatcactaaaagcaaataac
tataatgaagctgtatatttggtccgttttctgtctgatcttgtgaattgtcatgtgatc
gctgccccgtctatggttgctatgtttgagaattttgtaagtgtaactcaggaagaagat
gtgcctcaagtgcgacgggattggtatgtgtatgcatttctgtcatccttgccctgggtt
ggaaaagagttgtatgaaaaaaaagatgcagaaatggaccgcatcttctccaccactgaa
agctatctcaaaagacgccagaagactcacgtgcccatgttacaagtctggactgccgat
aaaccacatccacaagaagagtatttagattgcctgtgggcccagattcagaaattgaaa
aaagaccggtggcaggagaggcacatcctaagaccctaccttgcctttgacagcatcctc
tgtgaagctctgcagcacaacctgcctcctttcacaccgccgccccacacagaggactcc
gtgtacccgatgcccagggtcatcttcaggatgtttgactacacagatgacccagaaggc
cctgttatgccagggagccattcggtggagaggtttgtcatcgaggagaatcttcactgc
atcatcaagtcctactggaaggaaaggaagacttgcgctgcccagctggtgagctatcca
gggaagaacaagatccccttgaactaccacatagtggaggtgatctttgcagagctgttt
cagcttccagcgcctcctcacattgacgtgatgtacactacactgctaatcgaactgtgc
aaacttcagccgggctctctgccccaagtgcttgcacaggcaactgagatgctgtacatg
cgtcttgacacgatgagtaccacgtgtgttgacaggtttattaattggttttctcatcat
ctaagtaattttcaattccgttggagctgggaagattggtcagattgtcttactcaggat
cttgaaagtcccaaaccaaagtttgtaagggaagttctagagaagtgcatgaggttgtct
taccatcaacatatattagatattgttcctcccaccttctcagctctgtgtcctgcaaac
ccaacctgcatttacaagtatggagatgaaagtagcaattctcttcctggacattccgtg
gcactctgtttatctgttgcttttaaaagtaaggcaaccaacgatgagatcttcagcatt
ctgaaggacgtaccaaaccctaaccaggttgatgatgacgatgaagggttcagatttaac
cccttgaaaatagaggtctttgtccagactctgctgcacttagctgccaagtccttcagt
cactccttcagtgctcttgcgaagtttcatgaagtcttcaaaactctagcggagagtgat
aaggggaagctgcacgtgctgagagtcatgtttgaagtgtggaggaaccatccacagatg
attgctgtgctggttgataagatgattcgtacacagattgtcgactgtgctgcagtagca
aactggatcttctcatcggagctgtctcgggactttacgaggttgtttgtgtgggaaatt
ttgcactctacaattcgtaagatgaacaaacatgttctgaagatccagaaagagctagaa
gaagctaaagaaaaactggcgaggcagcacaaacgacgcagtgatgacgacgacagaagc
agtgacaggaaggacggtgccctggaggagcaaatagaaaggctgcaggagaaggtggag
gctgctcagagcgagcagaagaacctcttccttgtcatcttccagcgtttcatcatgatc
ttgaccgagcacttggtacgatgtgaaacggatgggaccagtatattgaccccgtggtat
aagaactgcatagagaggctgcagcagatcttcctacagcatcaccagaccatccagcag
tacatggtgaccctggagaacctgctcttcacggccgagttagaccctcacatcctggct
gtgttccagcaattctgtgctctgcaggcctaa
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