Mus caroli (Ryukyu mouse): 110292559
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Entry
110292559 CDS
T05910
Symbol
Abca1
Name
(RefSeq) ATP-binding cassette sub-family A member 1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal02010
ABC transporters
mcal04148
Efferocytosis
mcal04975
Fat digestion and absorption
mcal04979
Cholesterol metabolism
mcal05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
110292559 (Abca1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110292559 (Abca1)
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
110292559 (Abca1)
04979 Cholesterol metabolism
110292559 (Abca1)
09160 Human Diseases
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
110292559 (Abca1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
mcal02000
]
110292559 (Abca1)
Transporters [BR:
mcal02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
110292559 (Abca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
110292559
NCBI-ProteinID:
XP_021015583
Ensembl:
MGP_CAROLIEiJ_G0026027
UniProt:
A0A6P5PDN5
LinkDB
All DBs
Position
4:complement(46638766..46764894)
Genome browser
AA seq
2261 aa
AA seq
DB search
MACWPQLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNKSIVSRLFSDAQRLLLYSQKDT
SIKDMHKVLRMLRQIKHPNSNLKLQDFLVDNETFSGFLQHNLSLPRSTVDSLLQANVGLQ
KVFLQGYQLHLANLCNGSKLEEIIQLGDAEVSALCGLPRKKLDAAERVLHDNMDILKPIV
TKLNSTSHLPTQHLAEATTVLLDSLGGLAQELFSTKSWSDMRQEVMFLTNVNSSSSSTQI
YQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNNTEEDMDTFYDNSTSPYCNDLMK
NLESSPLSRIIWKALKPLLVGKILYTPDTPATRQVMAEVNKTFQELAVFHDLEGMWEELS
PQIWTFMENSQEMDLVRTLLDSRGNDQFWEQKLDGLDWTAQDIMAFLAKNPEDVQSPNGS
VYTWREAFNETNQAIQTISRFMECVNLNKLEPIPTEVRLINKSMELLDERKFWAGIVFTG
ITPDSVELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVV
EQAIIRVLTGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIV
YEKEARLKETMRIMGLDNGILWFSWFVSSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFV
FLSVFAMVTILQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFSIKIFAS
LLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTAVSMMLFDTFLYGVMTW
YIEAVFPGQYGIPRPWYFPCTKSYWFGEEIDEKSHPGSSQKGVSEICMEEEPTHLRLGVS
IQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIL
GKDIRSEMSSIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVG
LPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQ
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLS
SCRNSSSTVSCLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVSEARLVEDI
GHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVDAE
TSDGTLPARRNRRAFGDKQSCLHPFTEDDAIDPNDSDIDPESRETDLLSGMDGKGSYQLK
GWKLTQQQFVALLWKRLLIARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQ
PWMYNEQYTFVSNDAPEDMGTQELLNALTKDPGFGTRCMEGNPIPDTPCLAGEEDWTISP
VPQSIVDLFQNGNWTMKNPSPACQCSSDKIKKMLPVCPPGAGGLPPPQRKQKTADILQNL
TGRNISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGVSNSQALPPSHEVNDAIKQMKK
LLKLTKDSSADRFLSSLGRFMAGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQK
GENPSQYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQER
VSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLAL
LLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNDIN
DILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVEG
VVFFLITVLIQYRFFIRPRPVKAKLPPLNDEDEDVRRERQRILDGGGQNDILEIKELTKI
YRRKRKPAVDRICIGIPPGECFGLLGVNGAGKSTTFKMLTGDTPVTRGDAFLNKNSILSN
IHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEK
YASNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVVLT
SHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQEFFG
LAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVNF
AKDQSDDDHLKDLSLHKNQTIVDVAVLTSFLQDEKVKESYV
NT seq
6786 nt
NT seq
+upstream
nt +downstream
nt
atggcttgttggcctcagttaaggctgctgctgtggaagaacctgacatttcgaaggaga
caaacatgtcagctgttactggaagtggcctggcctctctttatcttcctgatcctgatc
tctgtccgcctgagctacccaccctacgaacagcatgagtgccactttccgaataaagcc
atgccgtctgcaggaaccctcccctgggtacaggggattatctgtaatgccaataacccc
tgcttccgttatccaactcccggcgaggctcccggtgttgttggaaactttaacaagtcc
atcgtgtctcgtctgttctcagatgctcagaggcttcttctgtacagccaaaaggatacc
agcattaaggacatgcacaaagtcctgagaatgttacggcagatcaagcatcccaactca
aatttgaagctccaggattttctggtggacaatgaaacattctctggattcctgcagcac
aatttgtcccttccaagatctactgtggacagcctgctgcaggcgaatgttggtctccag
aaggtatttttgcaaggctaccagttacatttggccaatctgtgtaacggatcaaaatta
gaagaaattattcagcttggtgatgcggaagtttctgccctctgtggtctaccgaggaag
aagctcgatgcagctgagagagtgctgcacgacaacatggacatcctgaagccaattgtg
acaaaactaaattccacatctcatctcccaacccagcatctggctgaagccaccacagta
ttgcttgacagcttggggggcctggcccaagagctgttcagcacaaagagctggagcgac
atgcggcaggaggtgatgtttctgaccaatgtgaacagctccagctcctccacccagatc
taccaggcagtgtcccgcatcgtgtgtggtcacccagagggcgggggcctgaagatcaag
tccctcaactggtacgaggataacaactacaaagccctctttggagggaataacactgag
gaagacatggacaccttctatgacaattctacaagtccttattgcaatgatttgatgaaa
aacttggagtctagtcctctttctcgaattatttggaaggcactcaagccactgcttgtt
ggaaagattctctatacacctgacacaccagctacaaggcaggtcatggctgaggtgaac
aagacctttcaggagttggctgtgttccatgacctggagggcatgtgggaagaactcagc
ccccaaatttggaccttcatggagaacagccaagagatggaccttgtccggacgctgtta
gacagcagaggcaatgaccagttttgggaacagaagttggatggattagattggactgcc
caagacatcatggcatttctggccaagaacccagaggatgttcagtccccaaatggctct
gtgtatacctggagagaagctttcaatgagaccaaccaggcaatccagacgatatctcga
ttcatggagtgtgtcaacctgaacaagctggagcccattccaacggaagtcaggctcatc
aacaagtccatggagctgctggatgagaggaagttctgggctggcatcgtgttcacaggc
atcactccagatagtgtggagctgccccatcatgtgaagtacaagatccggatggacatt
gacaacgttgagagaactaataagatcaaggatgggtactgggaccctggtcctcgggct
gacccttttgaagatatgcgctatgtctggggtggcttcgcctacttgcaggatgtggtg
gaacaggcgatcatcagagtgctgacgggaactgagaagaaaacgggtgtctatgtgcaa
cagatgccctacccctgttatgttgatgacatctttctgcgggtcatgagccggtcaatg
cccctcttcatgactctggcctggatctactctgtggctgtgatcatcaagggcattgtg
tatgagaaggaggctcggctgaaggagaccatgcggatcatgggtctggacaatggcatc
ctctggtttagctggttcgttagcagcctcatccctctgcttgtgagcgctggcctgctg
gtggtcatcttgaagttaggaaacctgctgccctatagtgaccccagcgtggtgttcgtc
ttcctgtcggtgtttgccatggtgaccatcctacagtgcttcctcattagcacgctcttc
tcccgtgccaacctggcagcagcctgtgggggcatcatctacttcacgctgtacctgccc
tatgtgctgtgcgtagcctggcaggactatgtgggcttctccatcaagatctttgctagc
ctgctgtctcctgtggcttttggattcggctgtgagtatttcgccctttttgaggagcaa
ggtattggggtccaatgggacaatctttttgagagcccggtggaggaggacggcttcaat
ctcaccactgcagtgtccatgatgctctttgacacctttctctatggcgtgatgacatgg
tacatcgaagccgtctttccaggacagtatggaattcccaggccctggtattttccttgt
accaagtcctactggtttggtgaggaaattgatgagaagagccaccctggttccagccag
aaaggagtgtcagaaatctgcatggaggaggaacccactcatctaaggctgggggtgtcc
attcagaacctggtgaaggtttaccgagatggcatgaaggttgctgtggatggcttggcg
ctcaatttttatgaaggccagattacctccttcctgggccacaatggagcagggaagacc
accaccatgtcaatactgactgggctgtttcccccaacttctggcacagcctacatcctg
gggaaggacattcgctcggagatgagctccatccggcagaacctgggagtctgtccccaa
cataatgtgctgtttgacatgctgactgttgaagagcacatctggttctatgcccgccta
aaggggctctcagagaagcatgtgaaagcagagatggagcagatggccctggatgttggc
ttacccccgagcaagctgaaaagcaaaacgagtcagctctcaggtgggatgcagagaaag
ctgtctgtggccttggccttcgtgggtggatccaaggttgtcattctggacgagcccaca
gccggggtggacccgtactctcgcaggggaatatgggaactcttgctgaaataccgacaa
ggccgcaccattattttgtctacacaccacatggacgaagctgacatccttggggacaga
attgccatcatttcccatgggaagctgtgttgtgtgggctcctccctgtttttgaaaaac
cagttgggaacgggttactatctgaccctggtcaagaaagatgtggaatcatccctcagt
tcctgcagaaacagtagcagcaccgtgtcttgtctgaaaaaggaggacagtgtttctcag
agcagttctgatgctggcctgggcagcgaccatgaaagtgacacgctgaccatcgatgtc
tctgctatctccaacctcatcaggaagcacgtgtctgaagcccggctggtggaggacatt
gggcatgaactgacctatgtgctgccgtacgaagccgcgaaggagggagcctttgtggaa
ctcttccatgagattgatgaccggctctcagacctgggcatctccagttatggcatctcg
gagaccaccctggaagaaatattcctcaaagtggctgaagagagcggggtggatgctgag
acctcagatggtactttgccagcaagacgaaacagacgggccttcggggacaagcagagc
tgtctgcacccatttacggaagatgatgctattgatcccaatgactctgacatagaccca
gaatccagggagacggacctgctcagtgggatggacggcaaaggctcctaccagctgaag
ggctggaaactcacccagcaacagtttgtggcccttttgtggaagaggctgctgattgcc
agacggagccggaagggtttctttgctcagattgtcctgccagctgtctttgtttgcatt
gccctggtcttcagcctgattgtgccaccctttggcaagtaccccagcctggaacttcag
ccctggatgtataatgagcagtatacatttgtcagtaacgatgctcccgaggacatgggc
acccaggaacttctgaatgctctgaccaaagatccaggcttcgggacccgctgtatggaa
ggaaacccaatcccagataccccttgcttggctggggaggaggactggaccatcagcccc
gttccccagagcatcgtggacctcttccagaatgggaactggaccatgaagaacccctca
cctgcgtgccagtgtagcagtgacaaaatcaagaagatgctgcctgtgtgtcccccaggg
gcaggggggctgccacctcctcagagaaaacagaaaaccgcagacatccttcagaatctg
acaggaagaaatatttcagattacctggtgaagacgtacgtgcagatcatagcaaaaagc
ttaaagaataagatctgggtgaacgagtttcggtatggcgggttttccctgggtgtcagt
aattcccaagcacttcctccgagccatgaagttaatgatgctatcaagcaaatgaagaaa
ctcctgaagctgaccaaggacagctccgcagatcgcttcctcagcagcctgggaaggttc
atggcagggctggatacgaaaaacaatgtcaaggtgtggttcaataacaagggctggcat
gctatcagttcgttcctgaatgtcatcaacaatgccattctccgggccaacctgcagaag
ggagagaacccgagccagtatgggatcactgctttcaaccatcccttgaacctcactaag
cagcagctctcagaggtggctctgatgaccacctctgtcgacgtcctcgtgtctatctgt
gtcatctttgcgatgtcctttgtccctgccagctttgttgtgttcttgatccaggagcgt
gtgagcaaagccaagcaccttcagttcatcagcggcgtgaagcccgtcatctactggctg
tccaattttgtctgggatatgtgcaattatgtggtccctgctacactggtcattatcatc
ttcatctgcttccagcagaagtcctatgtgtcctctaccaacctgcccgttctagccctt
ctgctcttgctgtatgggtggtcgatcactcctctcatgtacccagcatcctttgtgttc
aagatccccagcaccgcctatgtggttctcaccagtgtgaacctcttcatcggcatcaat
ggcagtgtggccactttcgtactggagctctttacaaacaataagctcaatgacatcaat
gacatcctgaagtctgtgtttcttatcttcccacatttttgcctggggcgagggctcatc
gacatggtgaagaaccaggccatggccgatgccctggagaggtttggggagaaccgcttt
gtctctccgctctcttgggacttagtaggacggaacctttttgccatggctgtggaaggg
gtggtgttcttcctcattactgttctgatccagtacagatttttcatcaggcccagacct
gtaaaggcaaagcttcctcctttgaatgatgaagacgaggatgtgaggcgggagaggcag
aggattctggatggtggcggacagaatgacatcctagagatcaaggaactgaccaagatc
tataggaggaagcggaagcctgcagtcgacaggatctgcatcggcatccctcccggagag
tgctttggactcctgggagttaacggagctgggaagtcaacaactttcaagatgctgact
ggagatacccctgtgaccagaggggatgctttccttaacaaaaacagcatcttatcaaat
atccatgaagtacaccagaacatgggctactgccctcagttcgatgccatcacagagctc
ttgactggaagagagcatgtggagttctttgccctcctgaggggagtcccagaaaaggaa
gttggcaaggttggtgaatgggcaattcgcaaactgggcctggtaaagtatggagaaaaa
tatgccagtaactacagtggcggcaacaaacgaaagctctccacagccatggctttgatt
ggcgggcctcctgtggtgtttctggatgaaccaaccacaggcatggaccctaaagcccgg
agattcttgtggaattgtgccctaagcattgtcaaggaggggagatctgtagtccttaca
tctcatagtatggaagaatgtgaagctctttgtacaaggatggccataatggtcaatgga
aggttcaggtgccttggcagtgtccaacatctgaaaaacaggtttggagatggttataca
atagttgtacgaatagcaggctccaaccctgacctgaagcctgtccaggagttctttgga
cttgcatttccaggaagtgtcctaaaagagaaacatcgaaacatgcttcagtaccagctt
ccatcctccttgtcatctctagccaggatattcagcatcctctcccagagcaaaaagcga
ctccacatagaagactactctgtctctcagacaacacttgaccaagtatttgtgaacttt
gccaaggaccaaagtgatgatgaccacttaaaggacctgtcactacacaaaaaccagacc
attgtggatgtggccgttctcacatcctttttgcaggatgagaaagtgaaagaaagttat
gtatga
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integrated database retrieval system
