Mus caroli (Ryukyu mouse): 110292668
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Entry
110292668 CDS
T05910
Symbol
Pabpc4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03015
mRNA surveillance pathway
mcal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110292668 (Pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
110292668 (Pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110292668 (Pabpc4)
03041 Spliceosome [BR:
mcal03041
]
110292668 (Pabpc4)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110292668 (Pabpc4)
mRNA cycle factors
Stress granule specific factors
110292668 (Pabpc4)
Spliceosome [BR:
mcal03041
]
Complex C
Other components
Complex C specific factors
110292668 (Pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RBD_RDR6
RRM_10
RRM_3
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
110292668
NCBI-ProteinID:
XP_021015806
Ensembl:
MGP_CAROLIEiJ_G0026435
UniProt:
A0A6P5PLS9
LinkDB
All DBs
Position
4:113066279..113081908
Genome browser
AA seq
660 aa
AA seq
DB search
MIAAASSYPMASLYVGDLHSDVTEAXLYEKFSPXGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEK
HEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPASAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASRGLPTT
AQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGIPTAVPNLAPRAAVAAAAPRAVAPYK
YASNVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHS
NLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTVAAATS
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgatcgctgcagccagcagctaccccatggcctccttatacgtgggcgatttgcactcg
gacgtcaccgaagccatnctgtatgaaaagttcagccctgnggggcctgtgctgtccatc
cgggtctgtcgcgatatgatcacccggcgctctctgggttatgcctacgtcaacttccag
cagccagctgacgctgagagagccttggacaccatgaacttcgacgtgataaaaggaaag
cccatccgcatcatgtggtcgcagagggatccctctttgagaaagtctggggtgggaaat
gtcttcatcaagaacctggacaaatccatagacaacaaggcactgtatgacactttctct
gcctttggaaacatcttgtcctgtaaggtggtctgtgatgagaacggctctaagggctat
gcttttgttcacttcgagacccaagaggccgccgacaaggccatcgagaagatgaatggc
atgcttctcaatgaccgtaaagtgtttgtgggtagattcaagtctcgcaaagagcgggaa
gcggagcttggagccaaggccaaggaattcaccaatgtttatatcaaaaactttggagaa
gaggtggatgatgggaatctgaaagagctcttcagccagtttggtaagaccctaagtgtc
aaggtgatgagagactccagtgggaagtccaaaggctttggctttgtaagttacgagaaa
cacgaggatgccaataaggctgtggaagaaatgaatggaaaagaaatgagcgggaaagcc
atatttgtaggccgtgcacagaaaaaggtagaaaggcaggctgagctcaagcggaagttt
gagcagctgaagcaggagaggattagccggtaccagggggtgaatctctacattaagaac
ttggatgacaccattgatgatgagaaattaaggaaagagttctctccctttggatcaatc
accagtgcaaaggtgatgttagaagatgggagaagcaaagggtttggctttgtctgtttc
tcctctcctgaagaggcgaccaaagctgtcaccgagatgaatggacgcattgtgggctcc
aagcctctgtacgtcgccctggcccagaggaaggaagagcggaaggctcacctgactaac
cagtacatgcagcgtgtagcggggatgagagcactccccgccagtgccatcttaaatcag
ttccagcctgcagctggtggctactttgtgcccgcagttccgcaggctcagggaagaccc
ccatattacacgcctaaccagttagcacagatgaggcctaatccacgctggcagcaaggc
gggagacctcaaggcttccaaggaatgccaagtgccctgcggcagtctgggcctcgtcca
gctcttcgacatctggctccaactggtaatgctccggcctctcgtggccttcctactact
gctcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggt
gccgcccagcaagggctgactgacagctgccagtctggaggcatccctacagccgtgcca
aaccttgcacctcgggccgcagttgctgccgccgctcccagggctgtggctccatataag
tacgcctccaacgtccgcagcccacaccctgccatccagccgctgcaggccccccagcct
gcagtccacgtccagggtcaggagcccctgactgcctccatgctggctgcagcgcccccc
caggagcagaagcagatgctgggggagcgtctgttcccgcttatccaaacaatgcattca
aatctggctgggaaaatcaccgggatgctgctggaaatcgacaactctgagctgctgcac
atgctggagtcccccgagtccctccgctccaaggtagatgaagccgtggcagtcctgcag
gctcatcacgccaagaaagaagctgcccagaaggtgggcactgttgctgctgctacctct
tag
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