Mus caroli (Ryukyu mouse): 110292865
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Entry
110292865 CDS
T05910
Symbol
Ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03013
Nucleocytoplasmic transport
mcal05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110292865 (Ndc1)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
110292865 (Ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110292865 (Ndc1)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
110292865 (Ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
ARM_At3g06530
Motif
Other DBs
NCBI-GeneID:
110292865
NCBI-ProteinID:
XP_021016158
Ensembl:
MGP_CAROLIEiJ_G0026252
UniProt:
A0A6P5PJM5
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All DBs
Position
4:99463018..99511545
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AA seq
673 aa
AA seq
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MATAASGPCAGGSPRDILWRVLGRRVVTSIVWSVVLLPVCITAFIVLSSIDLFHPIQWLS
DSCNDFYSSQAIFHLLLLAVVIIIISIFNVEFYTVVPSIPGSRLALIARILHPQQLTHSF
IHAAMGMAVAWCAAIMTKGQYSSLVVPCTGTESLDSPAAQTCVNEYHLFFLLSGAFMGYS
YSLLYFINNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFMVRNFCIVYYFFGHIPK
AWISTALDLHTDEQAHRPLDTIGGLLNVSLLYHVWLCGVFLLMTWYSSWILFKIYATEAH
VFPVQPPFAEASDECLPKVLNSNPPRIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHP
HNWTAISRECLNLLNDMTQKLVLYQEAAATNGRMYSSYSMEPKKLSSAEETAFQTPKPSQ
TPSVPPLVKTSLFSPKLSTPNVSSPFGTPFGSSVVNRMAGILDVNPFCGSPQSPQLIRRG
PRLWTHNSDQQVSEISNPSPCASVTAEGKTVRQPSVIYSWIQNKREQIKNFLSKRVLIMY
FFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQEA
VDKYFKLPHASSKPPRASGSLVDTSYRTLRFAFRASLKTAIYRITTTFGEHLNAVQASAE
HQKRLQQFLEFKE
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggccacggctgcgagcgggccctgcgccggcgggtcgccgcgggacatcctttggcgc
gttttgggtcggagggtagttaccagcatcgtttggtcagtagtgcttctacccgtctgc
atcacagcctttatagtcttaagcagcatcgatttattccaccctatccagtggctgtca
gattcttgcaatgacttctatagttcccaagcaatctttcacctcctgctgctggccgtg
gtcattataatcataagtattttcaatgtggaattctatacagtcgtgccctccataccc
ggctcccgactggccctgattgcgcggatcctgcatccccagcagctcactcactccttc
atccacgccgcgatgggaatggccgtggcttggtgtgcggccatcatgaccaagggccag
tacagctctctcgtggttccctgcactggaactgagagcttagatagccctgctgctcag
acctgcgtgaatgaatatcatctgtttttcctactgtccggagcattcatgggctatagc
tatagtcttctgtatttcattaacaacatgaattatctcccgtttcctattatacagcag
tacaaatttttgcgtttccggagatctctcctcttactagttaaacatagctgtgtggaa
tccctgttcatggtcagaaatttctgcattgtgtattatttttttggccatattcccaaa
gcgtggattagcactgctctggaccttcacacagatgagcaggctcacaggcctcttgac
acgataggcggcctcctgaacgtctcattactctaccacgtctggctgtgtggcgtcttc
ctcttgatgacttggtatagctcatggatactcttcaaaatctatgccaccgaggcacac
gtgttccctgttcagccaccttttgcagaagcctcagatgaatgccttcctaaagtctta
aacagcaaccccccacgcatcataaagtatttggccttacaggacctgatgctgctttct
caatattctccttctcggaggcaagaagttttcagcctcagccaaccaggtggacatccc
cacaattggactgctatttcgagggagtgtttgaatcttttaaatgatatgactcagaaa
ctggttctctaccaagaagctgctgctacaaatgggaggatgtattcatcatactcaatg
gaacccaagaaactgagctctgcagaagaaactgcttttcagactccaaaacctagtcag
acgccttccgtgccgccgttagttaaaacttcactgttttctccaaaattatctacaccc
aatgtttcaagtccttttgggaccccgtttggctccagtgtagtgaaccgaatggctgga
attcttgatgtaaaccccttctgtgggtctccccaaagtcctcagctcataagaagagga
ccgaggctgtggactcacaattctgatcaacaagtgtctgaaatttctaacccatctcct
tgcgcctctgttactgctgagggtaagacagtgagacagcccagtgtgatctactcgtgg
attcagaataaacgtgaacagattaagaatttcttgtcaaaacgggtgctgataatgtac
tttttcagtaagcacccagaggcctccattcaggctgttttttcagatgcccaaatgcat
atttgggctttagaaggtctgtctcacttagtagcagcgtcatttacagaagatagattt
ggagttgtccagaccacactcccagctatccttaatacgctattgactctgcaggaggct
gtcgacaagtacttcaagctgcctcatgcttctagtaaaccaccccgagcttcaggaagc
ctcgtggacacgtcctacagaacattaagatttgctttcagggcctccctgaaaaccgct
atctaccgtataaccaccacgtttggtgaacatctgaacgctgtgcaggcatctgcagaa
catcagaaaagacttcagcagttcttggagttcaaagaatag
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