Mus caroli (Ryukyu mouse): 110294409
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Entry
110294409 CDS
T05910
Symbol
Pms1
Name
(RefSeq) PMS1 protein homolog 1 isoform X2
KO
K10864
DNA mismatch repair protein PMS1
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcal03400
]
110294409 (Pms1)
DNA repair and recombination proteins [BR:
mcal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
110294409 (Pms1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HMG_box_2
HATPase_c_3
HATPase_c
HMG_WDHD1
ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
110294409
NCBI-ProteinID:
XP_021018293
Ensembl:
MGP_CAROLIEiJ_G0014118
UniProt:
A0A6P7RCQ3
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All DBs
Position
1:40839180..40943592
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AA seq
918 aa
AA seq
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MKQLPAATVRLLSSSQTITSVVSVVKELIENSLDAGATSIDVRLENYGFDKIEIRDNGEG
IKAVDVPVMAVKYYTSKISSHEDLGNLTTYGFRGEALGSICNVAEVVVTTRTSADDFSTQ
YVLDGSGHILSQKPSHLGQGTTVTALKLFKNLPVRKQFYSTAKKCKDELKNVQDLLISYG
VLKPDVRITFVHNKAVIWQKSRVPDHRMALMSVLGTAVMGNMESVEQHCEESQIYLSGFF
PKHDADHNSTSLSTPERSFIFINSRPVHHKDILKLIRRYYNLKCLKESTRLYPIFFLKID
VPSAEVDINLTPDKSQVLLQNKESVLIALENLMMTCYGPLPTTESSENNRLDVSSANMVV
SQTAETDVLFNKMESSGNSYPNADTSAIHFQKDESRKNIDHHLNEQINIGNSFDGHFSGD
INKDTFQNIPMNNLSSETNQTNHSETHSVGSFEHIQGENGRNGTGGSGGDGREALPEKAL
EICADDWSRGNLCNSMGENIEPVKILVPQKSFSCKVTNSHPSLEPENLSDGPCSRTSNVI
HNRSGQLTAYDLISNRAVKKPMSASALFIQDHRTQFLTENPKTGLEDATEQIKARWETLS
EEEKHKYEEKAKKDLERYNNQMKKAIEQETQVSLKDGRKKIRATSSWGWTQKHKVKDSSN
QPKLDELFQSQNEKKKSENIKITEVPFSMENLKVNLKKQKEVDLAEKDEICLIHSLKFPD
AWLVTSRADVMLLNPYRVEEALLFKRLLENHKLLAEPLEKPIILTESLLNGSHYLEVLRK
MSTVEERGSGSAYLCDPRLTANGFKIRLTQGVSSTENYLEIEGMAQCLPFYGIMDLKEIL
NAIVNKNAKEIYECRPRKVINYLEGEAVRLSRQLPMYLPREDVQDLIYRMKHQFGKEIKG
CVHGRPFFHHLTHLPGTS
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagttgcctgcagcgacagttcgcctcctctccagttctcagacaatcacatca
gtggtcagcgttgtgaaagagctcattgaaaactccttggatgccggagctaccagcatt
gatgttagattggagaactatggatttgataaaattgagattcgggacaatggtgagggc
atcaaggctgtagatgtccctgtaatggcagtgaagtactacacctcaaagatcagcagt
catgaagaccttggaaatctgacaacttatggttttcgtggtgaagccttggggtcaata
tgtaatgttgcagaggtggtagttacaacaaggacatctgctgatgactttagcactcag
tatgttttagatggcagtggccacatactttctcagaagccttcacatcttggtcaaggt
acaactgtaactgctctaaagttgtttaagaatctacctgtaagaaaacaattttactca
acagctaaaaagtgtaaagatgaactaaaaaatgtacaggaccttctcataagctatggt
gtcctgaaacctgacgtgaggattacttttgtacataataaggcagttatttggcagaaa
agcagagttccagatcacaggatggctctaatgtcggttctgggaactgctgtaatgggc
aacatggaatctgttgagcaacattgtgaagaatcacagatttacctaagtggattcttc
ccaaagcatgatgcagaccacaattccacaagtctttcaaccccagagagaagtttcatc
tttattaatagtcgaccagtacatcataaagatatacttaagttaattcgacgctactat
aatctgaagtgcctaaaggagtctacccgcttgtatcccattttctttctgaaaattgat
gttccatcagctgaggtggatataaatctaacaccagataaaagtcaagtgttattacag
aataaggaatctgttttaattgctcttgaaaatctgatgatgacctgttatggaccacta
cccactacagagtcttctgaaaataacagactagatgtttcctcagccaacatggttgtt
agtcagacagccgaaacagatgtgctttttaataaaatggaatcatctggaaatagttat
ccaaatgctgatacttcggctattcacttccaaaaggatgaatctagaaaaaacattgat
catcatttaaatgaacagataaatataggcaattcttttgatggtcattttagtggtgac
attaataaggacacatttcaaaatattcctatgaataatttatcatcagagactaatcag
actaatcacagtgaaactcattctgtaggttcttttgagcacatccaaggagaaaatggc
aggaatggtacaggaggaagtgggggagatgggagagaagcacttcccgagaaagctctg
gaaatctgtgcagacgattggagcagaggaaatctgtgtaattcaatgggagagaatatc
gaacctgtgaaaattttagtgccacaaaagagcttttcatgtaaagtgaccaatagtcac
ccaagccttgaaccagagaatctcagtgatggtccttgtagcagaacatcaaatgtaatc
cataacagatctggacagcttacagcctatgacttaattagcaatcgagcagtcaagaag
cccatgtcagccagtgccctgttcattcaagaccaccgcactcagttcctcacagagaat
cccaagactggtttggaggatgcgacagaacaaattaaagcacgatgggagacactgagt
gaagaggaaaagcacaaatatgaggaaaaggctaaaaaggacttggaacgatacaataac
cagatgaagaaagctattgaacaagagacacaagtatcattaaaagacggcaggaaaaag
ataagggccaccagttcgtggggctggacacagaaacataaggtgaaagactcatctaat
cagccaaaacttgatgagctctttcagtcccagaatgaaaagaagaagagtgaaaatatt
aaaataacagaggttcccttttctatggaaaacttaaaagtgaacttgaagaaacaaaag
gaagttgacttagcggagaaggatgagatttgcctgatccacagtctcaagtttcctgat
gcgtggctggtcacgtccagagcagatgtcatgttactgaacccgtacagagtggaggaa
gccctgctatttaaaagacttcttgagaatcataaactccttgcagaaccactggaaaag
ccaattatattaacagagagtcttcttaatgggtctcattatctagaggttttacgtaaa
atgtcaacagttgaggaaagaggcagtggatcagcttacctgtgtgaccctcgtcttaca
gcaaatggcttcaagatcagattgacacaaggagtttccagtactgagaactacttggaa
atagaaggaatggctcagtgtctcccattctatggaataatggatttaaaggaaattctt
aatgctatagtaaacaagaatgcaaaggagatttatgaatgtagacctcgaaaagtaata
aattatctggagggagaagccgtccgtctatccagacagctacccatgtacttaccaaga
gaggatgtccaagatcttatctatagaatgaagcaccagttcggaaaagaaattaaaggc
tgtgttcatggccgcccattttttcatcatttgacccatcttccaggaacttcatga
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