Mus caroli (Ryukyu mouse): 110294517
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Entry
110294517 CDS
T05910
Symbol
Rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03030
DNA replication
mcal03410
Base excision repair
mcal03420
Nucleotide excision repair
mcal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110294517 (Rfc1)
03410 Base excision repair
110294517 (Rfc1)
03420 Nucleotide excision repair
110294517 (Rfc1)
03430 Mismatch repair
110294517 (Rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcal03032
]
110294517 (Rfc1)
03400 DNA repair and recombination proteins [BR:
mcal03400
]
110294517 (Rfc1)
DNA replication proteins [BR:
mcal03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
110294517 (Rfc1)
DNA repair and recombination proteins [BR:
mcal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
110294517 (Rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
RuvB_N
BRCT_2
Rad17
AAA_14
AAA_16
AAA_33
AAA_5
AAA_17
AAA_30
nSTAND3
AAA_18
NTPase_1
NPHP3_N
AAA_7
RNA_helicase
AAA_19
Motif
Other DBs
NCBI-GeneID:
110294517
NCBI-ProteinID:
XP_021018467
Ensembl:
MGP_CAROLIEiJ_G0027245
UniProt:
A0A6P5PQ36
LinkDB
All DBs
Position
5:complement(58544344..58626310)
Genome browser
AA seq
1130 aa
AA seq
DB search
MDIRKFFGVISTGKKPVNETVKNEKTKASEGTVKGKKGVKEAKVNNSCKEDAAKPKQPSK
KKRIIYDSDSESEETVQVKNAKKKSEKLSLSYKPGKVSRKDPVTYVSETDEDDDYVCKKA
ASKSKENGGSTNSYLGTSNVKKNEENVKTKNKPLSPIKLTPTSVLDYFGTESVQRSGKKM
VTSKRKESSQNTEDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLALLDEEPKIKKA
RKDSEEGESFSSVQADLSKAEKQKSPNKAEHFSTARKTYSPAKHGKGRASEDAKQPCKSA
HQKEASSSPKASAKLALMKAKEESSYKETELLAARRKESATEPKGEKTTPKKTKVSPTKR
ESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERD
EAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPG
KRSKYEIAAEAEMKKEKSKLERTPQKNDQGKRKISPTKKESESKKCKLTPLKNSPMKAVK
KEASTCPRGLDVKETHGSRSGSKEECLLWVDKYKPTSLKNIIGQQGDQSCANKLLRWLRN
WHKSSPEEKKHAKFGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNAS
DTRSKTSLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELI
GLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPP
AMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAA
GEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDG
DLVDSQIRSKQNWNLLPTQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIVQD
LSLHMSLRTYSSKRTVNMDYLSHLRDALVRPLTSQGVEGAQHVITLMDTYYLMKEDFENI
MEVSSWGGKPSAFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKTSRLSTGPALDSEYSEE
LQEDDTQSEKEQDAVETDAMIKQKKTRSSKPSKSEREKESKKGKGKNSKK
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atggacattcggaaattctttggggttatatcaactggaaaaaagcctgtaaacgagaca
gtaaagaatgagaagacaaaagcttcggagggaactgtcaaaggaaagaagggagtcaag
gaagccaaggtcaataactcctgtaaagaggacgccgccaaaccaaagcagcccagcaag
aagaagaggatcatctatgactcagattcagagtcagaggagacagtacaggtaaaaaat
gctaaaaagaaatcagaaaaattgtcactgtcttataaacctggtaaagtctctcggaag
gatcctgttacctacgtttctgagacagatgaagatgatgactatgtatgtaaaaaggca
gcctccaaatcaaaagagaatggaggatctacaaatagttaccttggaacatcaaacgtg
aaaaaaaatgaagaaaacgttaagactaagaacaagccgttatctccaataaaactcaca
ccgacgtcagtgctcgattattttggaacagaaagtgtccagagatctgggaagaagatg
gtgacaagcaaaaggaaagaatcttctcaaaacacagaggattccagattaaatgatgag
gccatcgccaagcagctgcagctggatgaagatgcagagctggagaggcagttgcatgaa
gatgaagaatttgcaagaacactggccttattggatgaagaacccaagatcaaaaaggcc
cgaaaggattctgaagagggagaatcattttcatctgtccaagctgatttaagcaaagca
gaaaagcagaaaagccctaataaagccgagcatttctcaactgcaagaaagacctacagt
cctgctaagcatggcaaggggagggcttcagaagatgctaagcagccttgcaaatcagct
caccagaaggaagccagttcctcacccaaggccagtgccaaactggcgcttatgaaagca
aaagaagaaagttcttacaaagaaacagagctgctggctgcaagaagaaaagaaagtgcc
actgagcccaaaggagagaaaacaactcctaagaaaacgaaagtttctccaactaagaga
gagtctgtaagcccagaagactctgaaaagaagcgcactaattaccaagcttatcgaagc
tacttaaaccgagaaggtcccaaagctctgggctccaaagaaatacccaagggagctgaa
aattgcttggaaggcctgacgtttgtgatcacaggagtgctggagtccattgaacgagac
gaagccaagtctctaattgaacgttatggggggaaagtaacaggaaacgtgagcaagaaa
acaaactacctcgtcatgggccgcgacagtgggcagtccaagagtgacaaggcagcagct
ctgggaacaaaaatcctggatgaagacggcctgttggatctgattcgaactatgccaggc
aagagatccaagtatgagatagctgctgaggctgagatgaagaaagaaaagtccaaattg
gagcgaacaccccaaaaaaatgaccaaggaaaaagaaaaattagtccaaccaagaaggag
tcagagtctaaaaagtgcaagctgactcccctaaagaacagtcctatgaaggcagtgaag
aaggaggcaagcacgtgtccaaggggcctggatgtcaaggagacacatggcagccgcagt
ggcagcaaagaggaatgtctgctctgggtagataagtacaagcccacgtcactcaagaac
ataatcggacagcagggtgatcagagctgtgccaacaaattgctacgctggctcagaaac
tggcacaagagttctcctgaagagaaaaaacatgcaaagtttggcaaacttgccagcaaa
gatgatggctccagtttcaaggcagcactgctgtctggccctccaggtgttggcaaaacc
actacagcttctcttgtgtgtcaggaattgggctacagttatgtggaactaaatgcaagt
gatactcggagtaagaccagtttgaaagcagttgttgctgaatcgttgaacaacaccagc
atcaaaggcttttatacaagtggagcagctccttccgtgagtgcgaggcacgccctcatc
atggatgaggtcgatggcatggcaggcaatgaagacaggggtggaattcaggagctaata
ggcctgataaaacatactaaaattcccatcatttgtatgtgcaatgatagaaaccacccc
aaaattcgctcattggttcattactgttttgatcttcgtttccaaagacctcgagttgaa
cagattaagagtgcaatgctgtctattgcatttaaagagggtttaaaaatcccccctcca
gctatgaatgaaataatattgggagctaatcaagatgtcagacaggttttacacaatctc
agtatgtggtgtgcacaaagtaaggccctgacctatgaccaagccaaggctgattctcag
agggctaagaaggatatcagactgggcccatttgatgtcactcggaaagtgtttgcagct
ggagaggagactgcacacatgtcactgatggacaagtcggatctcttcttccatgactat
tccatagcacccctctttgtccaggagaactacctgcatgtaaagcctgtggctgcaggg
ggtgacatgaaaaagcacttgatgcttttaagccgggcagcagatagcatatgtgacggt
gacttagtggacagtcagatccggagtaagcaaaactggaatctcctgcccacacaggcc
atctatgccagtgttcttcctggagagttgatgcggggctacatgactcagtttccgagc
ttcccgagctggctggggaagcactcgtctacaggcaaacatgatcggattgttcaggac
ctatccttgcacatgagtcttagaacttattccagcaaaaggacagtgaacatggattac
ctgtcacacctcagagacgcacttgtacgacccttgacctcacaaggggtagaaggggct
cagcatgtcatcacacttatggacacatactatctgatgaaagaagattttgagaacatc
atggaagttagcagctgggggggcaagcccagtgccttttccaagctggatcccaaggtg
aaagcggctttcacaagagcctacaataaggaggcccacctgaccccatactcacttcag
gtagtaaagacatcgaggctcagcacaggtccagcactggattctgagtacagtgaggag
ttacaggaagatgacactcagtctgagaaagagcaggatgcagtggagactgatgccatg
attaagcagaaaaagacaagatcttcaaagccttcaaagtcagaaagagagaaggaatcc
aaaaaaggaaaaggaaagaattcgaagaaatga
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