Mus caroli (Ryukyu mouse): 110294644
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Entry
110294644 CDS
T05910
Symbol
Pcdh7
Name
(RefSeq) protocadherin-7 isoform X1
KO
K16498
protocadherin delta 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
110294644 (Pcdh7)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mcal01009
]
110294644 (Pcdh7)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
mcal04515
]
110294644 (Pcdh7)
Protein phosphatases and associated proteins [BR:
mcal01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
110294644 (Pcdh7)
Cell adhesion molecules [BR:
mcal04515
]
Cadherins
Protocadherins
110294644 (Pcdh7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Mid2
Cadherin_pro
TMEM154
KIAA1549
LYRIC
MLANA
EphA2_TM
Adeno_E3_CR2
Fibulin_C
Pox_A14
Motif
Other DBs
NCBI-GeneID:
110294644
NCBI-ProteinID:
XP_021018660
Ensembl:
MGP_CAROLIEiJ_G0027229
UniProt:
A0A6P5PL31
LinkDB
All DBs
Position
5:51704102..52111608
Genome browser
AA seq
1255 aa
AA seq
DB search
MLRMRTTGWARGWCLGCCLLLPLCFSLAAAKQLLRYRLAEEGPADVRIGNVASDLGIVTG
SGEVTFSLESGSEYLKIDNLTGELSTSERRIDREKLPQCQMIFDENECFLDFEVSVIGPS
QSWVDLFEGRVIVLDINDNTPTFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNGIERY
ELLQEPGGGGSSGEGRRLGPADSAPYPGGGGNSASGGGSGGSKRRLDAPEGGGGTSPSGR
SSVFELQVADTPDGEKQPQLIVKGALDREQRDSYELTLRVRDGGDPPRSSQAILRVLITD
VNDNSPRFEKSVYEADLAENSAPGTPILQLRATDLDVGVNGQIEYVFGAATESVRRLLRL
DETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKI
GRIPLKDGVANVAEDVLVDTPIALVQVSDRDQGENGVVTCTVVGDVPFQLKPASDTEGDQ
NKKKYFLHTSAPLDYETTREFNVVIVAVDSGSPSLSSNNSLVVKVGDTNDNPPVFGQSVV
EVYFPENNIPGERVATVLATDADSGKNAEIAYSLDSSVMGTFAIDPDSGDILVNTVLDRE
QTDRYEFKVNAKDKGIPVLQGSTTVIVQVADKNDNDPKFMQDVFTFYVKENLQPNSPVGM
VTVMDADKGRNAEMSLYIEENSNIFSIENDTGTIYSTMSFDREHQTTYTFRVKAVDGGDP
PRSATATVSLFVMDENDNAPTVTLPRNISYTLLPPSSNVRTVVATVLATDSDDGINADLN
YSIVGGNPFKLFEIDSTSGVVSLVGKLTQKHYGLHRLVVQVNDSGQPSQSTTTLVHVFVN
ESVSNATVIDSQIVRSLHTPLTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIILIVMM
ARYCRSKSKNGYEAGKKDHEDFFTPQQHDKSKKPKKDKKNKKSKQPLYSSIVTVEASKPN
GQRYDSVNEKLSDSPSMGRYRSVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQA
VQDLPPANTFVGAGDNISIGSDHCSEYSCQTSNKYSKQPFRRVTFSVVSQPQDPHQGSLQ
SCYDSGLEESETPSSKSSSGPRLGALPLPEDNYERTTPDGSVGEAEHMENDSRPLPDVAL
TGKCTRECDEYGHSDSCWMPVRTSPERKKSQPKLSTFMPVDERGSQEKLANGEAAIMGDR
NRNLLNKKLTSSYETFSAASFSKNEEANPEDIPLTKTGEYKPSPVNTLTRREVYL
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgctgaggatgcggaccacgggatgggcgcgcggctggtgcttgggctgttgtctcctt
ctgccgctctgcttcagcctggccgccgccaagcagctgctccggtaccggctggcggag
gagggccccgccgacgtgcggatcggcaatgtggcctcggacctgggcatcgtgaccggc
tccggcgaggtgactttcagccttgagtctggttctgagtatctgaagattgacaacctc
accggcgagctgagcaccagtgagcggcgcatcgaccgagaaaagctgccccaatgtcag
atgatcttcgacgagaacgaatgtttcctggacttcgaggtgtcggtgatagggccctca
cagagctgggtggacctgtttgagggtcgggtcatcgtgctggacatcaacgataacacg
cccaccttcccctcgccggtgctcacgctcacggtggaggagaaccggcctgtaggcacg
ctgtacctgctgcccacggccaccgatcgtgactttggtcgcaatggcattgagcgctac
gagctgctccaggagcccgggggtggcggcagcagcggcgagggaaggcgcttggggccg
gcggacagcgccccctacccagggggcggcgggaacagcgcgagcggcggcggctctgga
ggctccaagcggcggctggacgcgcctgagggtggcggcgggacgagtcctagtggccga
agcagtgtgttcgagcttcaggtggcagacactccagacggcgagaaacaaccgcagctg
atcgtgaagggggcgctggaccgggagcagagagattcctatgagctgaccctccgagtg
cgcgatgggggcgacccacctcggtcttcgcaggccattttgcgggtgctcatcaccgac
gtgaatgacaacagcccccgcttcgagaagagcgtgtatgaggctgacctggctgagaac
agcgctccgggcacccccatcctacagttgcgagccaccgatttggatgtaggggtcaat
ggacagatcgagtatgtatttggggctgccaccgagtcggtaagacggctactgcgcctg
gatgaaacgtcgggctggctcagtgtcttacaccggatcgaccgcgaggaagtgaaccag
ttgagattcacagtaatggcccgtgaccgcgggcagcctcccaagactgataaggccacc
gtggtcctcaacatcaaagatgagaacgacaacgttccctccatcgaaattcgcaagata
gggcgcatcccacttaaggacggggtggccaacgtggctgaagatgtcctggtggacacc
cccatcgccctggttcaggtgtccgaccgtgaccaaggcgagaacggagtagtcacctgt
accgtagtgggagacgttcctttccagcttaagccagccagcgacacagagggcgatcaa
aacaagaaaaagtacttcctgcacacatctgccccactagactatgagaccacccgggag
ttcaacgtggtcatagtagctgtggactctggcagtcccagcctctccagcaacaattcc
ttggtggtcaaggtgggagacacgaatgacaaccctcctgtctttggccagtctgtggtt
gaggtttactttccagagaacaacattcctggggagagggtagccacagtgctggcaaca
gatgctgacagcgggaagaatgcagagatcgcctattcactggactcctcagtgatgggg
acttttgccatcgatcccgattctggcgacatcctggtcaatacagtactggaccgggag
cagactgacaggtatgagtttaaagttaatgccaaagacaaaggcatccctgtgctgcaa
ggcagcaccacggtgattgtacaggtggctgataaaaacgacaacgaccctaagtttatg
caagatgtctttaccttttatgtgaaggaaaacttacaacccaacagccctgtggggatg
gtcaccgtgatggatgctgacaagggacggaatgcagagatgagcctgtacatagaggag
aacagtaacattttttctattgaaaatgacacagggaccatttactccacaatgtctttt
gacagggaacatcagactacttacactttcagagtgaaggctgtggatgggggagatcct
cccaggtcggccacagccacagtctctctctttgtgatggatgaaaatgacaacgctccc
acagttacccttcccagaaacatttcctacacgttgctgccaccttcaagtaatgtcagg
acagtagtagctacagtgttagcaacagacagtgatgatggcatcaatgcggacttgaac
tacagcattgtgggagggaatcctttcaagctgtttgagattgattccaccagtggtgtg
gtttccttagtggggaaactcacccagaagcattatggcttgcacaggctggttgtgcaa
gtgaatgacagtggccagccttcccagtccactacgactttggtgcatgtatttgtcaat
gaaagtgtttccaatgcaactgtaattgactctcagatagtccgaagtttgcatacccca
ctcacccaggatatagctggtgacccaagctatgaaattagcaaacagagacttagtatt
gtcattggggtggttgctggcattatgacagtgatcctaatcattttaattgtcatgatg
gcaagatactgcaggtccaaaagtaaaaatggctacgaagctggcaaaaaagaccatgaa
gacttttttacaccccagcagcatgacaaatctaaaaagcctaaaaaggacaagaaaaac
aaaaaatctaagcagccactctacagcagtatcgtcactgtcgaagcttctaaaccaaat
ggacagaggtatgatagtgtcaatgagaagctgtcagacagcccaagcatgggccgatac
cgatctgttaatggtgggcctggcagtcccgacctggcaaggcattacaaatccagttcc
ccattgcctactgtccaacttcacccccagtcaccaactgcagggaaaaaacatcaagct
gtacaagatctaccaccagccaacacatttgtgggagcaggagacaacatttcaattgga
tcagatcactgctccgagtacagctgtcaaacaagtaacaagtacagcaaacagccattt
cgtagagtgacgttttctgttgtgagtcagcctcaggacccacatcaggggtcactgcag
agttgctatgacagcgggctggaggagtcagaaacaccaagcagtaagagttcatcaggg
ccaagactgggtgcccttccactcccagaggacaactatgagaggaccacgccggatggc
agtgttggtgaggcagagcatatggaaaatgattcaaggcctcttccggatgtagcgctg
accggcaagtgcacccgtgaatgtgatgaatatggtcattcagactcctgctggatgcca
gtgcgcacttccccagagaggaagaagagccagcccaaactctccactttcatgcctgtt
gatgaacgaggaagccaggaaaagctggccaatggcgaggctgccatcatgggtgaccgc
aacagaaacctcctgaacaaaaagttgacctcatcctatgagaccttcagtgcagctagt
ttcagcaaaaatgaggaagccaaccccgaggatattcctttaacaaaaacaggggaatat
aagccatctcctgtcaacactctcactagaagagaagtttatctgtag
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