Mus caroli (Ryukyu mouse): 110295148 Help Entry 110295148         CDS       T05910                                  Symbol Htt Name (RefSeq) huntingtin isoform X1   KO K04533   huntingtin Organism mcal  Mus caroli (Ryukyu mouse) Pathway mcal05016   Huntington disease mcal05022   Pathways of neurodegeneration - multiple diseases Brite KEGG Orthology (KO) [BR:mcal00001]  09160 Human Diseases   09164 Neurodegenerative disease    05016 Huntington disease     110295148 (Htt)    05022 Pathways of neurodegeneration - multiple diseases     110295148 (Htt)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:mcal03019]     110295148 (Htt)    04131 Membrane trafficking [BR:mcal04131]     110295148 (Htt)    03029 Mitochondrial biogenesis [BR:mcal03029]     110295148 (Htt) Messenger RNA biogenesis [BR:mcal03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      110295148 (Htt) Membrane trafficking [BR:mcal04131]  Endocytosis   Rab GTPases and associated proteins    Rab associated proteins     110295148 (Htt) Mitochondrial biogenesis [BR:mcal03029]  Mitochondrial quality control factors   Regulator of mitochondrial biogenesis    Other regulator of mitochondrial biogenesis     110295148 (Htt) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Htt_C-HEAT Htt_N-HEAT Htt_bridge Htt_N-HEAT_1 HEAT HEAT_GCN1 HEAT_EF3_N Motif Other DBs NCBI-GeneID:  110295148 NCBI-ProteinID:  XP_021019284 Ensembl:  MGP_CAROLIEiJ_G0027139 UniProt:  A0A6P5PT35 LinkDB All DBs Position 5:29706115..29853545 Genome browser AA seq 3118 aa AA seqDB search MATLEKLMKAFESLKSFQQQQQQQPPPQAPPPPPPPPPQPPQPPPQGQPPPPPPLPGPAE EPLHRPKKELSATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCSDDAESD VRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELAHLVRPQKC RPYLVNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIKVLLKAFIANLKSS SPTVRRTAAGSAVSICQHSRRTQYFYNWLLNVLLGLLVPMEEEHSTLLILGVLLTLRCLV PLLQQQVKDTSLKGSFGVTRKEMEVSPSTEQLVQVYELTLHHTQHQDHNVVTGALELLQQ LFRTPPPELLQALTTPGGLGQLTLVQEEARGRGRSGSIVELLAGGGSSCSPVLSRKQKGK VLLGEEEALEDDSESRSDVSSSAFAASVKSEIGGELAASSGVSTPGSVGHDIITEQPRSQ HTLQADSVDLSGCDLTSAATDGDEEDILSHSSSQFSAVPSDPAMDLNDGTQASSPISDSS QTTTEGPDSAVTPSDSSEIVLDGADSQYLGMQIGQPQEEDEEEAAGVLSGEVSDVFRNSS LALQQAHLLERMGHSRQPSDSSIDKYVTRDEVAEASDPESKPCRIKGDIGQPNDDDSAPL VHCVRLLSASFLLTGEKKALVPDRDVRVSVKALALSCIGAAVALHPESFFSRLYKVPLNT TESTEEQYVSDILNYIDHGDPQVRGATAILCGTLVYSILSRSRLRVGDWLGNIRTLTGNT FSLVDCIPLLQKTLKDESSVTCKLACTAVRHCVLSLCSSSYSDLGLQLLIDMLPLKNSSY WLVRTELLETLAEIDFRLVSFLEAKAESLHRGAHHYTGFLKLQERVLNNVVIYLLGDEDP RVRHVAATSLTRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHETQPPSHFSVSTIT RIYRGYSLLPSITDVTMENNLSRVVAAVSHELITSTTRALTFGCCEALCLLSAAFPVCTW SLGWHCGVPPLSASDESRKSCTVGMASMILTLLSSAWFPLDLSAHQDALILAGNLLAASA PKSLRSSWTSEEEANSAATRQEETWPALGDRTLVPLVEQLFSHLLKVINICAHVLDDVTP GPAIKAALPSLTNPPSLSPIRRKGKEKEPGEQASTPMSPKKVGEASAASRQSDTSGPVTA SKSSSLGSFYHLPSYLKLHDVLKATHANYKVTLDLQNSTEKFGGFLRSALDVLSQILELA TLQDIGKCVEEVLGYLKSCFSREPMMATVCVQQLLKTLFGTNLASQFDGLSSNPSKSQCR AQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEHDASGWFDVLQKVSAQL KTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQKQVLDLLAQLVQLRVN YCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKII QLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQY HQVLEMFILVLQQCHKENEDKWKRLSRQVADIILPMLAKQQMHIDSHEALGVLNTLFEIL APSSLRPVDMLLRSMFITPSTMASVSTVQLWISGILAILRVLISQSTEDIVLCRIQELSF SPHLLSCPVINRLRSGGGNVTLGECSEGKQKSLPEDTFSRFLLQLVGILLEDIVTKQLKV DMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATRLFTSDGCEGSFYTLDSLNARV RSMVPTHPALVLLWCQILLLINHTDHRWWAEVQQTPKRHSLSCTKSLNPQMSGEEEDSGS AAQLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQDLISLSHEPPVQDFISA IHRNSAASGLFIQAIQSRCENLSTPTTLKKTLQCLEGIHLSQSGAVLTLYVDRLLGTPFR ALARMVDTLACRRVEMLLAANLQSSMAQLPEEELNRIQEHLQNSGLAQRHQRLYSLLDRF RLSTVQDSLSPLPPVTSHPLDGDGHTSLETVSPDKDWYLQLVRSQCWTRSDSALLEGAEL VNRIPAEDMNDFMMNSEFNLSLLAPCLSLGMSEIANGQKSPLFEAAHGVILDRVTRVVQQ LPAVHQVFQPFLPIEPTAYWNKLNDLLGDTTTYQSLTILARALAQYLVVLSKVPAHLHLP PEKEGDTVKFVVMTVEALSWHLINEQIPLSLDLQAGLDCCCLALQVPGLWGVLSSPEYVT HACSLIHCVRFILEAIAVQPGDQLLGPESRSHTPRAVTKEEVDSDIQNLSHVTSACEMVA DMVESLQSVLALGHKRNSTLPSFLTAVLKNIVISLARLPLVNSYTRVPPLVWKLGWSPKP GGDFGTVFPEIPVEFLQEKEILKEFIYRINTLGWTSRTQFEETWATLLGVLVTQPLVMEQ EESPPEEDTERTQIHVLAVQAITSLVLSAMTVPVAGNPAVSCLEQQPRNKPLKALDTRFG RKLSMIRGIVEQEIQEMVSQRENTATHHSHQAWDPVPSLLPATTGALISHDKLLLQINPE REPGNMSYKLGQVSIHSVWLGNNITPLREEEWDEEEEEETDVPAPTSPPVSPVNSRKHRA GVDIHSCSQFLLELYSRWILPSSAARRTPVILISEVVRSLLVVSDLFTERTQFEMMYLTL TELRRVHPSEDEILIQYLVPATCKAAAVLGMDKTVAEPVSRLLESTLRSSHLPSQIGALH GILYVLECDLLDDTAKQLIPVVSDYLLSNLKGIAHCVNIHSQQHVLVMCATAFYLMENYP LDVGPEFSASVIQMCGVMLSGSEESTPSIIYHCALRGLERLLLSEQLSRLDTESLVKLSV DRVNVQSPHRAMAALGLMLTCMYTGKEKASPGRASDPSPATPDSESVIVAMERVSVLFDR IRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLH SAGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFLVSASTSPWVSAILPHVISRMGKLE QVDVNLFCLVATDFYRHQIEEEFDRRAFQSVFEVVAAPGSPYHRLLACLQNVHKVTTC NT seq 9357 nt NT seq  +upstreamnt  +downstreamnt atggcaaccctggaaaagctgatgaaggctttcgagtcgctcaagtcgtttcagcagcaa cagcagcagcagccgccgccgcaggcgccgccgccaccgccgccgccgccgcctcaaccc cctcagccgccgcctcaggggcagccgccgccgccaccgccgctgccaggtccggccgag gaaccgctgcaccgaccaaagaaggaactctcagccaccaagaaagaccgtgtgaatcat tgtctaacaatatgtgaaaacattgtggcacagtctctcagaaattctccagaatttcag aaactcttgggcatcgctatggaactgtttctgctgtgcagtgacgatgcggagtcagat gtcagaatggtggctgatgagtgcctcaacaaagtcatcaaagctttgatggattctaat cttccaaggctacagttagaactctataaggaaattaaaaagaatggtgctcctcgaagt ttgcgtgcagccctgtggaggtttgctgaactggctcacctggttcgacctcagaagtgc aggccttacctggtgaatcttcttccatgcctgacccgaacaagcaaaagaccggaggaa tcagttcaggagaccttggctgcagctgttcctaaaattatggcttcttttggcaatttc gcaaatgacaatgaaattaaggttctgttgaaagctttcatagcaaatctgaagtcaagc tctcccaccgtgcggcggacagcagccggctcagctgtgagcatctgccaacattctagg aggacacagtacttctacaactggctcctgaatgtcctcctaggtctgctggttcccatg gaggaagagcactccactctcctgatcctcggtgtgttgctcacattgaggtgtctagtg cccttgctccagcagcaggtcaaggacacaagtctaaaaggcagctttggggtgacacgg aaagaaatggaagtctctccttctacagagcagcttgtccaggtttatgaactgactttg catcacactcagcaccaagaccacaatgttgtgacaggggcactggagctcctacagcag ctcttccgtacccctccacctgagctcctgcaagcactgaccacaccaggaggtcttggg cagctcactctggttcaagaagaggcccggggccgaggccgcagcgggagcattgtggag cttttagctggagggggttcctcatgcagccctgtcctctcaagaaagcaaaaaggcaaa gtgctcttaggagaggaagaagccttggaagatgactcggagtccaggtcagatgtcagc agctcagcctttgcagcctctgtgaagagtgagattggtggagagctcgctgcttcttca ggtgtttccactcctggttctgttggtcacgacatcatcactgagcagcctagatcccag cacacacttcaagcagactctgtggatttgtccggctgtgacctgaccagtgctgctact gatggggatgaggaggacatcttgagccacagctccagccagttcagtgctgtcccatct gaccctgccatggacctgaatgatgggacccaggcctcctcacccatcagtgacagttct cagaccaccactgaagggcctgattcagctgtgactccttcggacagttctgaaattgtg ttagatggtgccgatagccagtatttaggcatgcagataggacagccacaggaggaagat gaggaggaagctgcaggtgttctttctggtgaagtctcagatgttttcagaaactcttct ctggcccttcaacaggcacacttgttggaaagaatgggccatagcaggcagccttccgac agcagtatagataagtatgtaacaagagatgaggttgctgaagccagtgatccagaaagc aagccttgccgaatcaaaggtgacataggacagcctaatgatgatgattctgctcctctg gtacattgtgtccgtcttttatctgcttcctttttgttaactggagaaaagaaagcactg gttccagacagagacgtgagagtcagtgtgaaggccctggccctcagctgcattggtgcg gctgtggcccttcatccagagtcgttcttcagcagactgtacaaagtacctcttaatacc acggaaagtactgaggaacagtatgtttctgacatcttgaactacatcgatcatggagac ccacaggtccgaggagctactgccattctctgtgggacccttgtctactccatcctcagt aggtcccgtctccgtgttggtgactggctgggcaacatcagaaccctgacaggaaataca ttttctctggtggactgcattcctttactgcagaaaacgttgaaggatgaatcttctgtt acttgcaagttggcttgtacagctgtgaggcactgtgtcctgagtctttgcagcagcagc tacagtgacttgggattacaactgcttattgatatgctgcctctgaagaacagctcctac tggctggtgaggaccgaactgctggaaactctggcagagattgacttcaggctcgtgagt tttttggaggcaaaagcagaaagtttacaccgaggggctcatcattatacagggtttcta aaactacaagaacgagtactcaataatgtggtcatttatttgcttggagatgaagacccc agggttcgacatgttgctgcaacatcattaacaaggcttgtcccaaagctgttttacaag tgtgaccaagggcaagctgacccagttgtggctgtagcaagggatcagagcagtgtctac ctgaagcttctcatgcatgagacccagccaccatcgcacttttctgtcagcaccatcacc agaatctatagaggctatagcttactgccaagtataacagatgtcaccatggaaaacaat ctctcaagagttgttgctgcagtttctcatgaactcattacgtcaacaacacgggcactc acatttggatgctgtgaagccttgtgtcttctctcagcagccttcccagtttgcacttgg agtttaggatggcactgtggagtgcccccactgagtgcctctgatgagtccaggaagagc tgcactgttgggatggcctccatgattctcaccttgctttcatcagcttggttcccactg gatctctcagcccatcaggatgccttgattttggctggaaacttgctagcagcgagtgcc cccaagtctctgagaagttcatggacctctgaagaagaagccaactcagcagccaccaga caggaggaaacctggcctgctctgggggatcggactctagtgcccttggtggagcagctt ttctcccacctgctgaaggtgatcaatatctgcgctcatgtcttggacgatgtgactcct ggaccagcaatcaaggcagccttgccttctctaacaaaccccccttctctaagtcctatt cgacggaaagggaaggagaaagaacctggagaacaagcttctactccaatgagtcccaag aaagttggtgaggccagtgcagcctctcgacaatcagacacctcaggacctgtcacagca agtaaatcatcctcactggggagtttctaccatctcccctcctacctcaaactgcatgat gtcctgaaagccactcacgccaactataaggtcaccttagatcttcagaacagcactgaa aagtttggggggttcctgcgctctgccttggacgtcctttctcagattctagagctggcg acactgcaggacattggaaagtgtgttgaagaggtccttggatacctgaaatcctgcttt agtcgagaaccaatgatggcaactgtctgtgtgcagcagctactgaagactctctttggg acaaacttagcctcacagtttgatggcttatcttccaaccccagcaagtctcagtgccga gcacagcgccttggctcttccagtgtgaggcccggcttatatcactactgcttcatggca ccatacacacacttcacacaggccttggctgacgcaagcctgaggaacatggtacaggcg gagcaggagcatgatgcctcggggtggtttgatgtactccagaaagtgtctgcccaattg aagacgaacctaacaagcgtcacaaagaaccgtgcagataagaacgctatccataatcac attaggctatttgagcctcttgttataaaagcattgaagcagtacaccacgacaacatct gtacaattgcagaagcaggttttagatttgctggcacagctggttcagctacgggtcaat tactgtctactggattcagaccaggtgttcatcgggtttgtgctgaagcagtttgagtac attgaagtgggccagttcagggaatcagaggcaattattccaaatatatttttcttcctg gtattactgtcttatgagcgctaccattcaaaacagatcattggaattcctaaaatcatc cagctgtgtgatggcatcatggccagtggaaggaaggctgttacacatgctatacctgct ctgcagcccattgtccatgacctctttgtgttacgaggaacaaataaagctgatgcaggg aaagagcttgagacccagaaggaggtggtggtctccatgctgttacgactcatccagtac catcaggtgctggagatgttcatccttgtcctgcagcagtgccacaaggagaatgaggac aagtggaaacggctctctcggcaggtcgcagacatcatcctgcccatgttggccaagcag cagatgcatattgactctcatgaagccctcggagtgttaaataccttgtttgagattttg gctccttcctccctacgtcctgtggacatgcttttgcggagtatgttcatcactccaagc acaatggcatctgtaagcactgtgcagctgtggatatctggaatcctcgccattctgagg gttctcatttcccagtcaaccgaggacattgttctttgtcgtattcaggagctctccttc tctccacacttgctctcctgtccagtgattaacaggttaaggagtggaggtggtaacgta acactaggagaatgcagcgaagggaaacaaaagagtttaccagaagatacattctcaagg tttcttttacagctggttggtattcttctagaagacattgttacaaaacagctcaaagtg gacatgagtgaacagcagcatacgttctactgccaagagctaggcacactgctcatgtgt ctgatccacatattcaaatctggaatgttccggagaatcacagcagctgccactagactc ttcaccagtgatggctgtgaaggcagcttctatactctagatagcctgaatgcacgggtg cgatccatggtgcccacgcacccagccctggtactgctctggtgtcagatcctactactc atcaaccacactgaccaccggtggtgggcagaggtgcagcagacacccaagagacacagt ctgtcctgcacgaagtcacttaaccctcagatgtctggcgaagaggaggattctggctcg gcagctcagctgggaatgtgcaatagagaaatagtgcgaagaggggcccttattctcttc tgtgattatgtctgtcagaatctccatgactcagaacacttaacatggctcattgtgaat cacattcaagatctgatcagcttgtctcatgagcctccagtacaagactttattagtgcc attcatcgtaattctgcagctagtggtctttttatccaggcaattcagtctcgctgtgaa aatctttcaactccaaccactctgaagaaaacacttcagtgcttggaaggcatccatctc agccagtctggtgctgtgctcacactgtatgtggacaggctcctgggcacccccttccgt gcgctggctcgcatggtcgacaccctggcctgtcgccgagtagaaatgcttttggctgca aatttacagagcagcatggcccagttgccagaggaggaactaaacagaatccaagaacac ctccagaacagtgggcttgcacaaagacaccaaaggctctattcactgctggatagattc cgactctctaccgtgcaggactcacttagccccttgcccccagtcacttcccacccactg gatggggatgggcacacatctctggaaacagtgagtccagacaaagactggtacctccag cttgtcagatcccagtgttggaccagatcagattctgcactgctggaaggtgcagagctg gtgaatcgtatccctgctgaagatatgaatgacttcatgatgaactcggagttcaaccta agccttttggctccctgtttaagccttggcatgagcgagattgctaatggccagaagagt cccctctttgaagcagcccatggagtgattctggaccgggtcacccgtgttgttcagcag cttcctgctgtccatcaagtcttccagcccttcctgcctatagagcccacggcctactgg aacaagttgaatgatctgcttggtgataccacaacataccagtctctgaccatacttgcc cgtgccctggcacagtacctggtggtgctctccaaagtgcctgctcatttgcaccttcct cctgagaaggagggggacacggtgaagtttgtggtaatgacagttgaggccctgtcatgg catttgatcaatgagcagatcccactgagtctggacctccaagccgggctagactgctgc tgcctggcactacaggtgcctggcctctggggggtgctgtcctccccagagtacgtgact catgcctgctccctcatccattgtgtgcgattcatcctggaagccattgcagtacaacct ggagaccagcttctcggtcctgaaagcaggtcacatactccaagagctgtcacaaaggag gaagtagactcagatatacaaaacctcagtcatgtcacttcagcctgcgagatggtggca gacatggtggaatccctgcagtcagtgctggctttgggccacaagaggaacagcaccctg ccttcatttctcacagctgtactgaagaacattgttatcagtctggcccgcctcccccta gttaacagctatactcgtgtgcctcctctggtatggaaactcgggtggtcacccaagcct ggaggggattttggcacagtgtttcctgagatccctgtagagttcctccaggagaaggag atcctgaaggagttcatctaccgcatcaacaccctagggtggaccagtcgtacccagttc gaagaaacttgggccaccctccttggtgtcctggtgactcagcccctggtgatggaacag gaagagagcccaccagaggaagacacagaaagaacccagatccatgttctggctgtgcag gccatcacctctctagtgctcagtgcaatgaccgtgcctgtggctggcaatccagctgta agctgcttggagcaacagccccggaacaagccactgaaggctctcgataccagatttgga agaaagctgagcatgatcagagggattgtagaacaagaaatccaagagatggtttcccaa agagagaatactgccactcaccattctcaccaggcatgggatcctgtcccttctctgtta ccagctactacaggtgctcttatcagccatgacaagctgctgctgcagatcaacccagag cgggagccaggcaacatgagctacaagctgggccaggtgtccatacactccgtgtggcta ggaaataacatcacacccctgagagaggaggaatgggatgaggaagaggaagaagaaact gatgtccctgcgccaacgtcaccacctgtgtctccagtcaattccagaaaacaccgtgct ggggttgatattcactcctgttcgcagtttctgcttgaattatacagccgatggatcctg ccatccagtgcagccagaaggacccccgtcatcctgatcagtgaagtggttcgatctctt cttgtagtgtcagacttattcaccgaacgtacccagtttgaaatgatgtatctgacgctg acagaactacggagagtgcacccttcagaagatgagatcctcattcagtacctggtgcct gccacctgtaaggcagctgctgtccttggaatggacaaaactgtggcagagccagtcagc cgcctactggagagcacactgaggagcagccacctgcccagccagatcggagccctgcac ggcatcctctatgtgttggagtgtgacctcttggatgatactgcaaagcagctcattcca gttgttagtgactatctgctgtccaatctcaaaggaatagcccactgcgtgaacattcac agccagcagcatgtgctggtaatgtgtgccactgctttctacctgatggaaaactaccct ctggatgtgggaccagaattctcagcatctgtgatacagatgtgtggagtaatgctgtct ggaagtgaggagtccaccccctccatcatttaccactgtgccctccggggtctggagcgg ctcctgctgtctgagcagctctctcggctagacacagagtccttggtcaagctaagtgtg gacagagtgaatgtacaaagcccacacagggccatggcagccctaggcctgatgctcacc tgcatgtacacaggaaaggaaaaagccagtccaggcagagcttctgaccccagccctgct acacctgacagcgagtctgtgattgtagctatggagcgagtgtctgttctctttgatagg atccgcaagggatttccctgtgaagccagggttgtggcaaggatcctgcctcagttccta gatgacttctttccacctcaagatgtcatgaacaaagtcattggagagttcctgtccaat cagcagccatacccacagttcatggccactgtagtttacaaggtttttcagactctgcac agtgctgggcagtcatccatggtccgggactgggtcatgctgtccctgtccaacttcaca caaagaactccagttgccatggccatgtggagcctctcctgcttccttgttagcgcatct accagcccatgggtttctgcaatccttccacacgtcatcagcaggatgggcaaactggaa caggtggatgtgaaccttttctgcctggttgccacagacttctacagacaccagatagag gaggaattcgaccgcagggctttccagtctgtgtttgaggtggtggcggcaccaggaagt ccataccacaggctgcttgcttgtttgcaaaatgttcacaaggtcaccacctgctga

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