Mus caroli (Ryukyu mouse): 110295507
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Entry
110295507 CDS
T05910
Symbol
Smarcd3
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03082
ATP-dependent chromatin remodeling
mcal04714
Thermogenesis
mcal05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110295507 (Smarcd3)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
110295507 (Smarcd3)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
110295507 (Smarcd3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcal03021
]
110295507 (Smarcd3)
03036 Chromosome and associated proteins [BR:
mcal03036
]
110295507 (Smarcd3)
Transcription machinery [BR:
mcal03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110295507 (Smarcd3)
Chromosome and associated proteins [BR:
mcal03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110295507 (Smarcd3)
PBAF complex
110295507 (Smarcd3)
GBAF(ncBAF) complex
110295507 (Smarcd3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
110295507
NCBI-ProteinID:
XP_021019667
Ensembl:
MGP_CAROLIEiJ_G0027020
UniProt:
A0A6P5PSU0
LinkDB
All DBs
Position
5:complement(19509007..19540766)
Genome browser
AA seq
483 aa
AA seq
DB search
MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGL
APAGMEPARKRAAPPPGQSQAQGQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQ
AYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIA
SWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQV
KRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSH
DKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDI
DVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYV
QDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVV
RNT
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggacgaagttgccggaggggcgcgcaaagccacgaaaagcaaactttttgag
tttctggtccatggggtgcgccccgggatgccgtctggagcccgaatgccccaccagggg
gcgcccatgggccccccgggctccccgtacatgggcagccccgcggtacgacccggcctg
gcccccgcgggcatggagcccgcccgcaagcgagcagcgcccccgcccgggcagagccag
gcacagggccagggccagcccgtgcccaccgccccagcgcggagccgcagtgccaagagg
aggaagatggctgacaaaatcctccctcaaaggattcgggagctggtacccgagtcccag
gcttacatggacctcctagcatttgagaggaaactggatcaaaccatcatgcggaagcgg
gtggacatccaggaggccctgaagaggcccatgaagcaaaagcgaaagctgcgcctttat
atctccaatacttttaaccctgcgaagcctgacgcggaagactctgatggcagcattgcc
tcctgggagctgcgggtggaggggaagctcttggatgatcccagtaagcagaagaggaag
ttttcttccttcttcaagagtttggtcattgagttggacaaagacctttatggcccagac
aaccaccttgttgagtggcaccggacacccacaacccaggaaacagatgggttccaagtg
aagagaccaggggacttgagtgtgcgctgcaccctgctcctgatgctggactatcagcct
ccccagttcaaattggacccccgcttagcccggctgctggggttacacacacagagccgc
tcagccattgtccaggcactgtggcagtatgtgaagaccaacaggctacaggactcccat
gacaaggagtacatcaatggcgacaagtatttccagcagatttttgactgtccccgccta
aagttctctgagattccccagcgcctcacagccctgctgctgcccccagacccaattgtg
atcaaccacgtcatcagcgtggacccatccgaccagaagaagacagcgtgctatgacata
gatgtggaggtggaggaaccactgaaggggcagatgagtagcttcctcctgtccacggcc
aaccagcaggagatcagtgctctggacagtaagatccatgagacgattgagtccataaac
cagctcaagatccagagggacttcatgctaagtttctccagagaccccaaaggctacgtc
caagacctgctccgctcccagagccgtgatctcaaggtgatgacagatgtggcagggaac
cccgaggaagaacgcagggctgagttctaccaccagccctggtcccaggaagctgttagc
cgctacttctactgtaagatccagcagcgcaggcaggagctggaacagtcgctggtcgtg
cgcaacacctag
DBGET
integrated database retrieval system
