KEGG   Mus caroli (Ryukyu mouse): 110295828
Entry
110295828         CDS       T05910                                 
Name
(RefSeq) eukaryotic initiation factor 4A-III-like
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
mcal  Mus caroli (Ryukyu mouse)
Pathway
mcal03013  Nucleocytoplasmic transport
mcal03015  mRNA surveillance pathway
mcal03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110295828
  09122 Translation
   03013 Nucleocytoplasmic transport
    110295828
   03015 mRNA surveillance pathway
    110295828
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcal03019]
    110295828
   03041 Spliceosome [BR:mcal03041]
    110295828
   03009 Ribosome biogenesis [BR:mcal03009]
    110295828
   03012 Translation factors [BR:mcal03012]
    110295828
Enzymes [BR:mcal01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     110295828
Messenger RNA biogenesis [BR:mcal03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     110295828
   mRNA cycle factors
    Stress granule specific factors
     110295828
Spliceosome [BR:mcal03041]
 Complex C
  Other components
   EJC/TREX
    110295828
Ribosome biogenesis [BR:mcal03009]
 Eukaryotic type
  90S particles
   Helicases
    110295828
Translation factors [BR:mcal03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    110295828
SSDB
Motif
Pfam: Helicase_C DEAD
Other DBs
NCBI-GeneID: 110295828
NCBI-ProteinID: XP_021019860
UniProt: A0A6P5PU85
LinkDB
Position
6:134323979..134325521
AA seq 229 aa
MLVLDEADEMLKKGFKEQIYDVYRYLPPATQVVLISATLPQEILEMTNKFMTDPIRILVK
RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANF
TVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYI
HRIGRSGRYGRKGVAIDFVKNDDIRILRDIEQYYATQIDEMPMNVADLI
NT seq 690 nt   +upstreamnt  +downstreamnt
atgctggttttggatgaggctgatgaaatgttgaagaaaggtttcaaggagcagatctat
gatgtgtacaggtatttgccaccagccacacaggtcgttctcatcagtgccacactgcct
caggagatcctggagatgaccaacaagttcatgaccgaccccatccgcatcctggtgaag
cgtgatgagttgactctggaaggcatcaaacagttctttgtggccgtggaaagagaggaa
tggaagtttgatactctatgtgatctctacgacacgctgaccatcacccaggccgtaatc
ttctgcaacaccaagaggaaggttgactggctgacagagaaaatgagagaagccaatttc
actgtgtcgtccatgcatggagacatgccccagaaagaacgagagtctatcatgaaggag
ttccggtcaggtgccagccgggtgctcatctccacagacgtctgggctcggggcctggat
gtccctcaggtgtccctcatcattaactatgacctgcccaacaacagagaactgtacatt
cacagaattgggagatcgggtcggtatggacgaaaaggtgtggccatcgattttgtgaag
aatgatgacatccggattctcagggacatcgagcagtactatgccacccagatagacgag
atgcccatgaacgtggctgacctcatctga

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