Mus caroli (Ryukyu mouse): 110296160
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Entry
110296160 CDS
T05910
Symbol
Polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X2
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110296160 (Polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcal03021
]
110296160 (Polr1a)
Enzymes [BR:
mcal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110296160 (Polr1a)
Transcription machinery [BR:
mcal03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
110296160 (Polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
110296160
NCBI-ProteinID:
XP_021020386
Ensembl:
MGP_CAROLIEiJ_G0028494
UniProt:
A0A6P5PQ32
LinkDB
All DBs
Position
6:68796817..68860316
Genome browser
AA seq
1717 aa
AA seq
DB search
MLASKHTPWRRLQGISFGMYSAEELKKLSVKSITNPRYVDNLGNPSANGLYDLALGPADS
KEVCSTCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLL
ISQLRVLEVGALQAVYELEQILSRFLEETGDPSAFEIQEELEEYTSKILQNNLVGSQGTH
VKNVCESRSKLVAQFWKTHMAAKQCPHCKTGRSVVRKEHNSKLIITYPATVHKKSDQKGT
ELPEGMPEAPGIDKAQMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFN
PSMFFLDFIVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPC
EMTEVTIDKENDSSVAIDRSFLGLLPGRSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEK
YPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVT
PWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDAAQREAVAKQLLTPATGAPKPQ
GTKVVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDE
MNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQY
MELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLNLSGKAKIGS
KVWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGET
SGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVMRQRIIEESTQCGPQAVKAALSL
PETVSCDEIQGKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACMPLGLHRQFPENN
LQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTG
RFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGS
VVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPQKVLCHFKAIK
KWHHKHSGALLRKGAFLSFSQKIQAAVKALNLKGGIQNGRSPETQQMLQMWYDLDEESRW
KYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDFSQEWAAQAERSYKKSELSLDRLR
TLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILM
VASANIKTPMMSVPVFDTKKALKKVKSLKKRLTRVCLGEVLQKVDIQESFCMGEKRNKFQ
VYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAVKKKKSKASAFSSVNARRAT
QKDLSDTEDSGTSRREEERDEEEEGNIVDAEAEEGDADASDTKRKEKQEEEVDYESEEEG
EEEEEEEVQEEGDIKGDGVHQGHEPDEEEHLGLEEESSSQNPPRRHSRPQGAEAIKRRIQ
AVRESHSFIEDYQFDTEESLWCQVTVKLPLMKINFDMSSLVVSLAHKAIVYTTKGITRCL
LNETTNSKNERELVLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEK
EIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSSSPLQQMTFETSFQFLKQ
ATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atgctggcctccaagcacacaccatggaggcggcttcagggcatttccttcggaatgtat
tcggccgaagagctcaagaagttaagtgttaaatccattacaaatcctcgctatgtggac
aacctgggaaacccttcagcaaatggcctgtatgatttggctttgggtcctgcagattcc
aaagaagtatgctcgacctgcgtgcaggacttcaacaactgctctggacacctgggccac
attgacctcccgctcacagtctacaaccctttcctctttgataaactctacctgctgctt
cgaggttcctgtttaagttgccacatgctgacttgtcctcgggctgcaatttacctgttg
atctcccagctgagagtcctggaagttggagccctgcaagcagtctacgagcttgagcaa
attctcagcaggtttctggaagaaactggagatccttccgccttcgaaattcaagaagag
ttagaagaatacacaagtaaaattctgcagaacaacctcgtggggtcccagggcacacac
gtgaaaaatgtgtgcgagagcagaagcaaacttgtcgctcagttctggaagacacacatg
gctgcgaagcagtgtccgcactgcaagacgggacggtcggtggttcgaaaggagcataat
agtaaactaataatcacatacccagccacggtgcacaagaaatcagaccagaagggcaca
gaactcccagaaggaatgccagaagctccaggaattgacaaggctcagatggggaaacga
gggtacctgaccccaagcagcgcccaagaacaccttttcgccatttggaagaatgaagga
ttctttctgaattatcttttttcgggattggatgatattggcccggagtccagtttcaac
cccagtatgttctttctggacttcatagtggtaccgccatccaggtaccgtcccgtcaac
cgcctgggcgaccagatgttcactaatggccagacagtaaacttgcaagctgtcatgaag
gatgccgttttgatccggaaacttctggcgttgatggcccaagaacagaaactgccctgt
gagatgacagaagtcaccatagacaaggaaaatgactcctcagtggctatcgaccgatcc
ttcctaggtttgcttccaggccggtctctcacagataaactttacaacatttggattcgc
cttcagagccacgtcaatattgtgtttgacagtgagatggacaaattgatgttggaaaag
taccctggcataagacagatcctagagaagaaggaaggcttgttccggaagcacatgatg
ggaaagcgagttgactacgcagcccgctcggtcatctgcccagacatgtacatcaacacc
aatgagatcggaatccccatggtatttgccacaaaactgacttaccctcagccagttacc
ccctggaatgtgcaggaactgagacaggcagtcatcaatggacccaatgtgcacccagga
gcctccatggtcatcaacgaggatggcagtcgcacagccctgagcgcagtggatgctgcg
cagcgggaagctgtggccaaacagctcctgacaccagccacaggggctcctaagcctcag
gggacaaaagttgtgtgccggcatgtgaaaaatggggacatcctcctcctgaatcgacag
cctaccttgcacagaccctccatccaggcccatcgtgcccacattctgccggaagaaaaa
gtcctacgccttcactatgccaactgcaaggcctacaatgctgactttgatggagatgag
atgaacgcccacttcccccagagtgagttgggccgagctgaagcctatgtcctggcctgc
actgatcagcagtatcttgttcccaaggatggccagccattggcaggactgatccaagat
cacatggtttcaggtgcaaacatgaccattcggggatgctttttcacccgggaacagtac
atggaactggtgtaccgagggctcacagacaaagtgggacgcgtgaagctctttcctccc
gccatcctgaagcccttcccactgtggacaggaaaacaggttgtgtcgaccctcctcata
aacataattccagaggactacgcccccctgaacttatctggaaaggcaaaaatcggcagc
aaagtctgggtgaaggaaaagccacggcctatccctgactttgacccagactccatgtgt
gagtcccaggtgatcatcagggaaggagagctgctctgcggagtgctggacaaggcacac
tacgggagctctgcctacggcctggtccactgctgctatgagatctatgggggtgagacc
agcggcagggttctcacctgcctagcccgcctcttcactgcctacctacagctctataga
ggtttcaccttgggtgtagaagacattttggttaagccaaatgcagatgtgatgagacag
cgcatcattgaagaatctacccagtgtggaccccaggctgtcaaggctgcattgagcctg
ccagaaactgtatcatgtgatgaaatccaagggaaatggcaggatgcccatctgagcaaa
gaccagagggattttaacatgattgatatgaagttcaaggaggaggtgaaccattacagc
aatgagattaacaaggcatgtatgcctcttggcttgcacaggcagttccccgaaaacaac
ctgcagatgatggtgcagtcgggagccaaagggtcaaccgtgaacacgatgcaaatctca
tgcctgctgggccaaattgaattggaaggtcggagacccccactgatggcgtctggcaag
tcactgccctgctttgagccttacgagttcacccccagggctggtggctttgtcactgga
aggttccttaccggtatcaggcctcctgagttcttcttccactgcatggcgggacgagaa
ggcctggtggacactgctgtcaaaaccagccgttctggctatctccaaaggtgtatcatc
aagcacctggaggggctggtcatccagtacgatctgacggtccgtgacagcgacggcagc
gtggtccagttcctgtatggggaggacggcctggacatccccaagacacagttcctacag
cccaagcagttcccctttctggccagcaattatgaggtgataatgaaatccaagcatctt
catgaagttttatccagagcagatccccagaaagtgctctgccacttcaaagccattaaa
aaatggcatcacaagcattccggtgccctgctgagaaaaggcgccttcctcagtttttcc
cagaagatccaggcagctgtgaaagctttgaacctaaagggcggtatccagaatggccgc
agccctgagacccagcagatgttacagatgtggtatgacttggatgaagagagccggtgg
aaataccagaagagggctgccccttgtcccgaccctagcctttccgtgtggcgcccagac
atctactttgcatctgtgtctgaaacattcgaaaagaagattgatgacttcagtcaggaa
tgggcagctcaagcagagaggagttacaaaaaatcagagctttccctcgacaggctgaga
accttactgcagctgaagtggcagcgctcactgtgtgacccaggcgaggctgttggcctc
ctggctgcccagagcatcggagagccctccacacagatgacactgaacaccttccacttt
gcaggcagaggcgagatgaacgtcaccctgggcattccaagattgagggagattctcatg
gtggccagtgccaacatcaaaacgcccatgatgagtgtgcctgtgttcgacaccaagaaa
gcattgaagaaagtgaagagtctaaagaagaggctcaccagagtgtgcctgggggaggta
ttgcagaaagttgacatccaggagtccttctgtatgggagaaaaacggaataaattccag
gtgtatgaactccggtttcagttcctgccacatgcgtattaccagcaggagaagtgcctg
agacccgaggacatcttgcacttcatggaaaccagattctttaagctactaatggaagct
gtcaagaagaagaaaagcaaggcatcagccttcagcagtgtgaatgcgaggagagctaca
cagaaggacctcagtgacaccgaggactcggggacgagtcggagagaggaggaaagggat
gaggaagaggaggggaacattgtggatgctgaagctgaggagggcgatgcagacgcttct
gacaccaaacgcaaggagaagcaagaagaggaggttgactatgagagtgaggaagaagga
gaggaggaagaggaggaggaggtacaagaagaaggggacatcaaaggtgacggtgtccac
cagggccatgagccagatgaggaagaacatttaggcctcgaggaggagtcatcatcccag
aaccctccccgccgccactccaggcctcagggagctgaggccataaaacgccggatccag
gctgtacgggagtcccactcattcatcgaggactaccagtttgacacagaggagagcctg
tggtgtcaggtgactgtgaagcttccactgatgaagattaattttgacatgagctccttg
gttgtgtccttggcccacaaagccattgtctatacgaccaagggcatcactcggtgcctc
ctgaacgaaacgaccaacagtaagaatgagagggagcttgtactgaacactgagggaatc
aaccttcccgagctgttcaagtactccgagatactggacctgcgccggctctactccaat
gacatccacgccatggccaatacttacggcatcgaggctgcgttacgggtgatagagaag
gagattaaagatgtgtttgctgtgtatggcattgcagttgatcctcgccatctctccctg
gtggctgattacatgtgttttgagggggtttataagccactcaatcgctttgggatccag
tcaagctcctcccctttgcagcagatgacatttgaaaccagcttccagtttctgaaacag
gccaccatgatgggatcccatgatgaactgaagtcaccttctgcctgcctcgtggtagga
aaggttgtcaaaggcggaacaggcttatttgagctcaagcagcccctaagatag
DBGET
integrated database retrieval system
