KEGG   Mus caroli (Ryukyu mouse): 110296844
Entry
110296844         CDS       T05910                                 
Symbol
Ybx3
Name
(RefSeq) Y-box-binding protein 3 isoform X1
  KO
K06099  cold shock domain protein A
Organism
mcal  Mus caroli (Ryukyu mouse)
Pathway
mcal04530  Tight junction
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    110296844 (Ybx3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mcal03000]
    110296844 (Ybx3)
   03041 Spliceosome [BR:mcal03041]
    110296844 (Ybx3)
Transcription factors [BR:mcal03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   Cold-shock domain factors, DbpA-like
    110296844 (Ybx3)
Spliceosome [BR:mcal03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA binding proteins (RBPs)
    110296844 (Ybx3)
SSDB
Motif
Pfam: CSD OB_RNB S1CSD-TOTE-2
Other DBs
NCBI-GeneID: 110296844
NCBI-ProteinID: XP_021021291
Ensembl: MGP_CAROLIEiJ_G0028947
UniProt: A0A6P5PZC3
LinkDB
Position
6:complement(128334807..128358398)
AA seq 361 aa
MSEAGEATTGGTTLPQAAADAPAAAPPDPAPKSPAASGAPQAPAPAALLAGSPGGDAAPG
PAPASSAPAGGEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP
PRNYAGEEEEEGSGSSEGFEPPAAEGQFSGARNQLRRPQYRPPYRQRRFPPYHVGQTFDR
RSRVFPHPNRMQAGEIGEMKDGVPEGTQLQVHRNPTYRPRFRRGPARPRPAPAIGEAEDK
ENQQAANGPNQPSARRGFRRPYNYRRRSRPLNAVSQDGKETKAGEAPTENPAPATEQSSA
E
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgagcgaggcgggcgaggccaccaccggcggcaccacgctcccgcaggccgcggccgac
gcgcccgccgcggcgcccccggaccccgcgcctaagagcccggcggccagcggcgcgccc
caggccccggcgcccgccgcgctgctcgcggggagccccggcggagacgcagcccccggg
cccgccccggcctcatcagcccccgcgggcggcgaggacgcggagaagaaagttctcgcc
accaaagtccttggcactgtcaaatggttcaacgtcagaaatggatatggatttataaac
cgaaatgacaccaaagaagatgtgtttgtacaccagactgccatcaagaaaaacaatcca
cgcaagtatctgcgcagtgtgggggatggagaaactgtagagtttgatgtagttgaagga
gaaaagggtgctgaagcagcaaatgtgactggcccagatggagttcctgtagaagggagt
cgctatgctgctgaccggcgccggtacagacgcggctactatggcaggcgccgtggacct
ccccgtaattacgctggggaggaggaggaggaagggagcggcagcagtgaaggatttgag
ccccctgctgcagaagggcagttctctggggccaggaatcagctgcgccgcccccagtat
cgccctccataccggcagcggcgtttcccgccttaccacgtgggacagacctttgaccgt
cgctcacgggtctttccccatcccaacagaatgcaggctggtgagattggggagatgaag
gatggagtccccgagggaacacagctccaggttcatcggaatccgacttaccgcccgagg
ttccgcaggggacctgctcgcccacgacctgcccctgctattggagaggctgaagacaaa
gaaaaccagcaagcggctaatggtccaaaccagccgtctgcccgccgtggattccgacgt
ccctacaactataggcgccgttcccgtcccctgaacgctgtttcacaagatggcaaagag
accaaggcaggtgaagcaccaactgagaaccccgctccagccaccgaacagagcagtgcc
gagtga

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