Mus caroli (Ryukyu mouse): 110296848
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Entry
110296848 CDS
T05910
Symbol
Lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03018
RNA degradation
mcal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110296848 (Lsm8)
09123 Folding, sorting and degradation
03018 RNA degradation
110296848 (Lsm8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110296848 (Lsm8)
03041 Spliceosome [BR:
mcal03041
]
110296848 (Lsm8)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110296848 (Lsm8)
mRNA degradation factors
5'-3' decay
Lsm complex
110296848 (Lsm8)
Spliceosome [BR:
mcal03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110296848 (Lsm8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
110296848
NCBI-ProteinID:
XP_021021294
Ensembl:
MGP_CAROLIEiJ_G0028125
UniProt:
A0A6P5RG32
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All DBs
Position
6:14402374..14407647
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AA seq
96 aa
AA seq
DB search
MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctgctttggagaactacatcaaccgaactgtggctgttattacttctgatggc
agaatgattgtgggaacactaaaaggttttgaccagaccattaacttgattttggatgaa
agccatgagcgggtgttcagctcttctcagggagtagaacaagtggtgttggggttatac
attgtgaggggcgacaatgtagcagtcattggggaaatagatgaagagacagattctgca
ctcgacttggggaacatccgagcagaacctctgaactccgtagcacactga
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