Mus caroli (Ryukyu mouse): 110297033
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Entry
110297033 CDS
T05910
Symbol
Bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110297033 (Bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110297033 (Bard1)
04121 Ubiquitin system [BR:
mcal04121
]
110297033 (Bard1)
03036 Chromosome and associated proteins [BR:
mcal03036
]
110297033 (Bard1)
03400 DNA repair and recombination proteins [BR:
mcal03400
]
110297033 (Bard1)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
110297033 (Bard1)
Ubiquitin system [BR:
mcal04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
110297033 (Bard1)
Chromosome and associated proteins [BR:
mcal03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
110297033 (Bard1)
DNA repair and recombination proteins [BR:
mcal03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
110297033 (Bard1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_2
Ank_4
Ank_3
Ank_5
BRCT_2
BRCT
zf-RING_5
Ank_KRIT1
zf-C3HC4
zf-C3HC4_2
ANK_LRRK2
zf-C3HC4_4
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
110297033
NCBI-ProteinID:
XP_021021493
Ensembl:
MGP_CAROLIEiJ_G0014236
UniProt:
A0A6P5Q4F8
LinkDB
All DBs
Position
1:complement(64640308..64706515)
Genome browser
AA seq
765 aa
AA seq
DB search
MPRRPPRVCSGNQPPPVPAMEPATDGLWAHSRAALARLEKLLRCSRCANILKEPVCLGGC
EHIFCSGCISDCVGSGCPVCYTPAWILDLKINRQLDSMIQLYSKLQNLLHDNKDSKDNTS
GANLFGDAERKKNSIKMWFSPRSKKVRYVVTKVSVQTQPQKAKDDKAQEASMYEFVSPTP
PVAVSKSAKTASRTSAKKHRKKSVAKINREGNLRPETKDSRFDSKEELKEEKVVSCSQIP
VMERPWVNGEIDLLASGSVVESECSGSLTEVSLPLAEHIVSPDTVSKNEETPEKKVCVKD
LRSGGSNGNRKGCHRPTTSTSNSCGSNIPSTSRDIGEPTLLAENVVLVDCSSLPSGQLQV
DVTLRRKSNTSDDPLSLSPGTPPPLLNNSAHRQTMSSPSTAKLSSGVPTRKRNHRGETLL
HIASIKGDIPSVEYLLQNGNDPNVKDHAGWTPLHEACSHGHLKVVELLLRHNALVNTPGY
QNDSPLHDAVKSGHIDIVKVLLSHGASRNAVNIFGVRPVDYTDNENIRSLLLLPEKNESF
STSQCSVVNTGQRKNGPLVIIGSGLSSQQQKMLSKLETVLKAKKCVEFDSTVTHVIVPDE
EAQSTLKCMLGILNGCWILKFDWVKACLDSKVREQEEKYEVPGGPQRSRLNREQLLPKLF
DGCYFFLGGNFKHHPRDDLLKLIAAAGGKVLSRKPKPDSDVTQTINTVAYHAKPESDQRF
CTQYIVYEDLFNCHPERVRQGKVWMAPSTWLISCIMAFELLPLDS
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgccacgccggcctccgagggtctgctctgggaaccagcctcctcccgtgcccgccatg
gagccggctaccgacgggctttgggcccacagccgcgcggcgcttgcccgcctggagaag
ctgctgcgctgctcccgctgtgctaatattctgaaggagcccgtgtgcttaggaggatgt
gagcacatcttctgtagtggttgtataagtgactgtgttggctcaggatgcccagtgtgt
tacaccccagcctggatcctagacctcaagataaaccgacagttggacagcatgatccag
ctttatagtaagcttcaaaatttgctccatgacaataaagattcaaaagacaacacatct
ggggcaaatttatttggtgatgcagaaaggaagaagaattcaataaaaatgtggtttagt
cctcgaagtaagaaggttagatatgttgtgactaaagtgtcagtacaaacacagcctcaa
aaggcaaaggacgacaaagcccaggaagcctcaatgtatgaatttgtttccccaactccc
cctgtagctgtttctaagagtgctaaaacagcttctagaacatctgcaaaaaagcatcgg
aagaaatccgtagctaagatcaacagggaggggaatttaaggccagaaacaaaggatagt
agatttgattccaaagaggagctgaaggaagagaaggttgtctcctgtagccaaatacca
gttatggagagaccatgggtaaatggcgaaatagacttattagcaagtggttctgttgta
gaatctgaatgttctggaagcttgactgaagtctctttaccattggctgagcatatagtg
tctccagacactgtgagcaagaatgaagagactccagagaagaaggtctgtgtaaaagat
cttcgttcaggagggagtaatggaaatcgtaaaggctgccacaggcctaccacttctact
tctaacagttgtgggagcaacattccgagcaccagcagagacatcggtgagccaacattg
cttgcagaaaatgtagtgttggttgactgctcttcactgccttcaggccagctacaggtt
gatgtcacactcaggagaaagagtaacacatcagatgacccccttagtctttcaccgggc
acacccccacctctgctgaacaattcagctcacagacaaacgatgtcaagcccctccaca
gcgaagctgtcttctggtgttccaaccaggaaaagaaaccacagaggagagactttactt
catattgcttctattaagggtgatataccttctgttgaatacctcttgcaaaatggaaac
gacccaaatgttaaagaccatgctggatggacaccgttgcatgaagcctgcagtcatggg
cacctgaaggtagtggagttgctgctccggcataatgccctggtgaacacccctggctat
cagaatgattcgccactccacgatgccgtcaagagtggccacatcgatatagtcaaggtg
ttactgtcccacggtgcttccaggaatgctgttaacatatttggtgtgcggcctgtggat
tatacagacaatgagaatataagatcattattgctgctgccagagaagaatgaatcattc
tcaactagccagtgctctgtcgtgaacactgggcagcgaaagaatgggccgctggtaatt
ataggcagtgggctttcttcacagcagcagaaaatgctcagcaaacttgagacagttctt
aaggctaaaaagtgtgtggaatttgacagtacagtaactcatgtcattgttcctgatgag
gaagcgcagagtactctgaagtgtatgcttgggattctcaacggatgctggatcctgaag
tttgactgggtgaaagcttgtctggacagcaaagtacgtgagcaggaagaaaagtatgaa
gttcctggaggtccacagaggagcaggctcaacagagagcagctgttgccaaagctgttt
gatggatgctacttctttttggggggaaacttcaagcatcatccaagggatgacctcctt
aagctcattgctgcagcaggaggcaaagtcctcagtcggaagcccaagccggacagtgat
gtgactcagaccatcaacacagttgcataccatgccaagcctgagtcggatcagcgcttc
tgtacgcagtacatcgtctatgaagacctgtttaactgtcacccagagagggttcggcag
ggcaaagtctggatggctccttccacctggcttatcagctgtataatggcctttgaattg
cttcctcttgacagctga
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